{"paper":{"title":"Augmenting transcriptome assembly combinatorially","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","headline":"","cross_cats":[],"primary_cat":"q-bio.GN","authors_text":"2) ((1) Ganit Labs, (2) Strand Life Sciences, Applied Biotechnology, Bangalore, Binay Panda (1, Bio-IT Centre, India, India), Institute of Bioinformatics, Neeraja M. Krishnan (1), Prachi Jain (1)","submitted_at":"2013-05-27T15:50:46Z","abstract_excerpt":"RNA-seq allows detection and precise quantification of transcripts, provides comprehensive understanding of exon/intron boundaries, aids discovery of alternatively spliced isoforms and fusion transcripts along with measurement of allele-specific expression. Researchers interested in studying and constructing transcriptomes, especially for non-model species, often face the conundrum of choosing from a number of available de novo and genome-guided assemblers. A comprehensive comparative study is required to assess and evaluate their efficiency and sensitivity for transcript assembly, reconstruct"},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"1305.6259","kind":"arxiv","version":2},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"}