{"paper":{"title":"Packaging, containerization, and virtualization of computational omics methods: Advances, challenges, and opportunities","license":"http://creativecommons.org/licenses/by/4.0/","headline":"","cross_cats":["cs.DC","cs.SE","stat.AP"],"primary_cat":"q-bio.GN","authors_text":"Andre M. Ribeiro-dos-Santos, Brendan Lawlor, Byoung-Do (BD) Kim, Can Firtina, Derek Strong, Eleazar Eskin, Jaqueline Brito, Malak S. Abedalthagafi, Mohammed Alser, Nathan LaPierre, Neha Rajkumar, Nour Almadhoun, Onur Mutlu, Qiyang Hu, Ram Ayyala, Richard J. Abdill, Serghei Mangul, Sharon Waymost, Varuni Sarwal","submitted_at":"2022-03-30T12:44:45Z","abstract_excerpt":"Omics software tools have reshaped the landscape of modern biology and become an essential component of biomedical research. The increasing dependence of biomedical scientists on these powerful tools creates a need for easier installation and greater usability. Packaging, virtualization, and containerization are different approaches to satisfy this need by wrapping omics tools in additional software that makes the omics tools easier to install and use. Here, we systematically review practices across prominent packaging, virtualization, and containerization platforms. We outline the challenges,"},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"2203.16261","kind":"arxiv","version":1},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"integrity":{"clean":true,"summary":{"advisory":0,"critical":0,"by_detector":{},"informational":0},"endpoint":"/pith/2203.16261/integrity.json","findings":[],"available":true,"detectors_run":[],"snapshot_sha256":"c28c3603d3b5d939e8dc4c7e95fa8dfce3d595e45f758748cecf8e644a296938"},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"}