{"paper":{"title":"Stiff-spring approximation revisited: inertial effects in non-equilibrium trajectories","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","headline":"","cross_cats":["cond-mat.stat-mech","physics.bio-ph"],"primary_cat":"physics.comp-ph","authors_text":"Bruno Tomberli, C. G. Gray, Mostafa Nategholeslam","submitted_at":"2016-07-25T19:53:17Z","abstract_excerpt":"Use of harmonic guiding potentials is the most common method for implementing steered molecular dynamics (SMD) simulations, performed to obtain potentials of mean force (PMFs) of molecular systems using non-equilibrium work (NEW) theorems. Harmonic guiding potentials are also the natural choice in single molecule force spectroscopy experiments. The stiff spring approximation (SSA) of Schulten and coworkers enables to use the work performed along SMD trajectories to obtain the PMF.\n  We discuss and demonstrate how a high spring constant, k, required for the validity of the SSA can violate anoth"},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"1607.07430","kind":"arxiv","version":1},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"}