{"paper":{"title":"A Scored Non-Deterministic Finite Automata Processor for Sequence Alignment","license":"http://creativecommons.org/licenses/by/4.0/","headline":"","cross_cats":["cs.ET"],"primary_cat":"cs.DC","authors_text":"Ryan Karbowniczak Rasha Karakchi","submitted_at":"2024-10-11T14:42:05Z","abstract_excerpt":"The rapid growth of symbolic data in areas like internet, biological, and financial data has increased the demand for efficient pattern matching and regular expression processing. Non-deterministic Finite Automata (NFA) are used for these tasks, but general-purpose platforms often face memory bottlenecks due to the concurrent nature of NFAs. To address this, Domain-Specific Architectures (DSAs) like FPGA and ASIC-based automata processors have been developed for improved efficiency. However, many modern applications require identifying the optimal match path, such as in DNA sequence alignment,"},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"2410.19758","kind":"arxiv","version":1},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"integrity":{"clean":true,"summary":{"advisory":0,"critical":0,"by_detector":{},"informational":0},"endpoint":"/pith/2410.19758/integrity.json","findings":[],"available":true,"detectors_run":[],"snapshot_sha256":"c28c3603d3b5d939e8dc4c7e95fa8dfce3d595e45f758748cecf8e644a296938"},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"}