{"paper":{"title":"A Showcase of Using the Partial-Structure R1 to Assemble Small-Molecule Crystal Structures","license":"http://creativecommons.org/licenses/by/4.0/","headline":"","cross_cats":["cond-mat.mtrl-sci"],"primary_cat":"physics.comp-ph","authors_text":"Xiaodong Zhang","submitted_at":"2026-07-15T13:45:20Z","abstract_excerpt":"Using a few concrete examples this paper has demonstrated a few observations on using the partial-structure R1 (pR1) to assemble small-molecule crystal structures. (1) Assembling can start with orienting and/or placing large fragments or small fragments containing heavy atom(s). (2) It is handy to attach a fragment to a partial model as only the orientation needs to be optimized. (3) In a structure containing heavy atoms it is impossible to directly calculate the orientations of a light-atom-only fragment. Instead, it is necessary to use residual reflection intensities in which the contributio"},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"2607.13836","kind":"arxiv","version":1},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"integrity":{"clean":true,"summary":{"advisory":0,"critical":0,"by_detector":{},"informational":0},"endpoint":"/pith/2607.13836/integrity.json","findings":[],"available":true,"detectors_run":[],"snapshot_sha256":"c28c3603d3b5d939e8dc4c7e95fa8dfce3d595e45f758748cecf8e644a296938"},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"}