{"paper":{"title":"MBRarefy: data-adaptive multi-bin rarefying for alpha diversity association analysis","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","headline":"","cross_cats":["stat.ME"],"primary_cat":"stat.CO","authors_text":"Mo Li","submitted_at":"2026-06-19T00:23:32Z","abstract_excerpt":"Summary: This paper presents MBRarefy, an R package that provides a reproducible workflow for alpha diversity analysis under confounding from heterogeneous library sizes. Building on the multi-bin rarefying approach in Li et al (2024), MBRarefy supports alpha diversity association analysis with repeated rarefying, bin-wise testing, and cross-bin meta-analysis. A key new feature is automated, data-adaptive selection of library size bin thresholds via a genetic algorithm (GA), which replaces ad hoc cutpoints with an objective optimization procedure based on the rarefying-derived profiles. The pa"},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"2606.21000","kind":"arxiv","version":1},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"integrity":{"clean":true,"summary":{"advisory":0,"critical":0,"by_detector":{},"informational":0},"endpoint":"/pith/2606.21000/integrity.json","findings":[],"available":true,"detectors_run":[],"snapshot_sha256":"c28c3603d3b5d939e8dc4c7e95fa8dfce3d595e45f758748cecf8e644a296938"},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"}