{"paper":{"title":"Contributions of the Petabyte Scale Sequence Search Codeathon toward efforts to scale sequence-based searches on SRA","license":"http://creativecommons.org/publicdomain/zero/1.0/","headline":"","cross_cats":[],"primary_cat":"q-bio.OT","authors_text":"Adelaide Rhodes, Adrian Viehweger, Alexander Sweeten, Alexa Salsbury, Amatur Rahman, Andrew Tritt, Arianna I. Krinos, Artem Babaian, Bari\\c{s} Ekim, Christiam Camacho, C. Titus Brown, Daniel P. Rice, David M. Kristensen, Genevieve R. Krause, George Lesica, Harihara Subrahmaniam Muralidharan, Jack W. Roddy, Jacquelyn S. Michaelis, J. Rodney Brister, Katrina Kalantar, Kjiersten Fagnan, Mihai Pop, Olaitan I. Awe, Priyanka Ghosh, Ravinder Pannu, Ren\\'e KM Xavier, Rob Patro, Rodrigo Ortega Polo, Ryan Connor, Sergey Madaminov, Taylor Reiter, Tessa Pierce-Ward, Thomas Colligan, Thomas L. Madden, Travis J. Wheeler, Vadim Zalunin, Victor Lin, Vin\\'icius W. Salazar","submitted_at":"2025-05-09T19:39:55Z","abstract_excerpt":"The volume of biological data being generated by the scientific community is growing exponentially, reflecting technological advances and research activities. The National Institutes of Health's (NIH) Sequence Read Archive (SRA), which is maintained by the National Center for Biotechnology Information (NCBI) at the National Library of Medicine (NLM), is a rapidly growing public database that researchers use to drive scientific discovery across all domains of life. This increase in available data has great promise for pushing scientific discovery but also introduces new challenges that scientif"},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"2505.06395","kind":"arxiv","version":1},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"integrity":{"clean":true,"summary":{"advisory":0,"critical":0,"by_detector":{},"informational":0},"endpoint":"/pith/2505.06395/integrity.json","findings":[],"available":true,"detectors_run":[],"snapshot_sha256":"c28c3603d3b5d939e8dc4c7e95fa8dfce3d595e45f758748cecf8e644a296938"},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"}