{"as_of":"2026-08-17T20:11:00Z","caps":{"database_statements":6,"inbound":100,"outbound":100},"context_digest":"sha256:fe5a8fe21364795de5bac9951b795d5a397941828934f8bbda66c19b2145bd39","coverage":[{"denominator":121,"lane":"reference_resolution","note":"Typed states for the displayed outbound observations.","records_observed":100,"source":"paper_references, paper_reference_links","source_observed_at":"2026-08-10T22:12:21.655239Z","state":"measured"},{"denominator":103,"lane":"standing_notices","note":"One-hop event checks from named stored sources.","records_observed":103,"source":"scholarly_work_events, retraction_status_cache","source_observed_at":"2026-08-17T06:30:58.91139+00:00","state":"measured"},{"denominator":3,"lane":"inbound_itemization","note":"Pith citing papers itemized under the disclosed page cap.","records_observed":3,"source":"paper_references, paper_reference_links","source_observed_at":"2026-08-07T04:17:39.671746Z","state":"measured"},{"denominator":1,"lane":"external_citation_measurements","note":"A source-named dated measurement, never combined with another source.","records_observed":0,"source":"pith","source_observed_at":"2026-08-06T23:42:10.084308Z","state":"measured"}],"external_citation_measurements":[],"inbound":[{"citation":{"cited_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":"2501.02680","snapshot_observed_at":"2026-08-07T04:17:39.671746Z","title":null,"venue":null,"work_id":null,"year":2025},"citing_paper":{"arxiv_id":"2506.11378","last_updated":"2026-07-16T14:14:55Z","snapshot_observed_at":"2026-08-09T01:22:58.480287Z","submitted_at":"2025-06-13T01:01:07Z","title":"The Effect of Stochasticity in Score-Based Diffusion Sampling: a KL Divergence Analysis","version":3},"reference_index":16,"source":"pdf_text","source_observed_at":"2026-08-07T04:17:39.671746Z"},"links":{"cited_paper":"/paper/2501.02680","citing_paper":"/paper/2506.11378"},"observation_digest":"sha256:a55e66a6c8c8b04b75cd5db908588d0451977d7ba466e9a9660482b047caaaea","observation_id":"8843187c-3200-414f-ab24-8494e0b42bac","resolution":{"observed_at":"2026-08-07T04:17:39.671746Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":"2501.02680","snapshot_observed_at":"2026-08-06T23:48:26.239174Z","title":"F., Medina-Ortiz, D., Davari, M","venue":null,"work_id":null,"year":2025},"citing_paper":{"arxiv_id":"2506.16091","last_updated":"2025-06-19T07:25:14Z","snapshot_observed_at":"2026-08-14T01:00:12.327235Z","submitted_at":"2025-06-19T07:25:14Z","title":"Geometric deep learning assists protein engineering. Opportunities and Challenges","version":1},"reference_index":83,"source":"arxiv_source","source_observed_at":"2026-08-06T23:48:26.239174Z"},"links":{"cited_paper":"/paper/2501.02680","citing_paper":"/paper/2506.16091"},"observation_digest":"sha256:792f4c1ad120fc38dd8bf7ed73eacee84b2761852c040bd9d0de64fe873b934f","observation_id":"22e1333c-b972-4049-b05b-bb4a58cd6efb","resolution":{"observed_at":"2026-08-06T23:48:26.239174Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"cited_work":{"arxiv_id":"2501.02680","doi":null,"metadata_source":"pith","pith_arxiv_id":"2501.02680","snapshot_observed_at":"2026-08-06T23:42:10.084308Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","venue":"q-bio.QM","work_id":"1fb5b9ef-ca2c-4e64-b42a-6d1be38a1b83","year":2025},"citing_paper":{"arxiv_id":"2506.16921","last_updated":"2025-06-20T11:29:32Z","snapshot_observed_at":"2026-08-11T10:54:51.606443Z","submitted_at":"2025-06-20T11:29:32Z","title":"EHCube4P: Learning Epistatic Patterns Through Hypercube Graph Convolution Neural Network for Protein Fitness Function Estimation","version":1},"reference_index":5,"source":"pdf_text","source_observed_at":"2026-08-06T23:42:03.490018Z"},"links":{"cited_paper":"/paper/2501.02680","citing_paper":"/paper/2506.16921"},"observation_digest":"sha256:cb13eb6066c0e81472a091b232869152fd318e6225452cfb1279db2b0360dfa0","observation_id":"5a5e2f9b-d114-4581-8707-3a6ffbaee389","resolution":{"observed_at":"2026-08-06T23:42:10.214752Z","resolver_source":"local_arxiv","status":"metadata_mismatch"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}}],"links":{"evidence":"/evidence","html":"/paper/2501.02680/citation-record","integrity":"/paper/2501.02680/integrity","json":"/paper/2501.02680/citation-record.json","paper":"/paper/2501.02680"},"outbound":[{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:16.685998Z","title":"write newline","venue":null,"work_id":null,"year":null},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":1,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:16.685998Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:9704a6370a97741feff4342b07a51089a0bd196e4859ffe0a9a0e4f36f0d03e4","observation_id":"935af85c-be0a-4556-bbe9-c6cc1a656f99","resolution":{"observed_at":"2026-08-10T22:12:16.685998Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:16.754834Z","title":"and Kim, P","venue":null,"work_id":null,"year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":2,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:16.754834Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:2ae4f689a5ffb2ca3b1299373bc0063e0adf86687dc9b0a3e54ea785862e6c22","observation_id":"44c38db8-f1d7-4a3f-8706-30ee7fdf7109","resolution":{"observed_at":"2026-08-10T22:12:16.754834Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:16.804822Z","title":"and Kim, P","venue":null,"work_id":null,"year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":3,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:16.804822Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:982164c45b3990df10939c999ed85b5a57463d43fe3863ec888f2b940929f57c","observation_id":"26e03076-114c-4439-b5af-6a0da825cb06","resolution":{"observed_at":"2026-08-10T22:12:16.804822Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:16.858257Z","title":"J., Bambrick, J., Bodenstein, S","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":4,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:16.858257Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:765dc73e7fd67b2a4d908a054fb902e0199220b4a7afa5b3379e79fa9e6a3022","observation_id":"649a3567-70f0-4eca-9c98-1b7c7292cf98","resolution":{"observed_at":"2026-08-10T22:12:16.858257Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:16.904759Z","title":"X., Fusi, N., Amini, A","venue":null,"work_id":null,"year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":5,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:16.904759Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:a8b07baada5170229d0fb10f1be493cb4b7e5ae859e91a051e9d991aaef5f66d","observation_id":"c5fdd4f4-21f6-49d4-9c77-6ceea6cadf77","resolution":{"observed_at":"2026-08-10T22:12:16.904759Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:16.918471Z","title":"X., Fusi, N., Amini, A","venue":null,"work_id":null,"year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":6,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:16.918471Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:0696a6071c5f04dcb61b13b5aada541b6d7aae93f43976f89540b5d4f5dad9b7","observation_id":"a78df140-4cd1-4c2e-ac8e-2c2f73b26388","resolution":{"observed_at":"2026-08-10T22:12:16.918471Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:16.944842Z","title":"and G \\'o mez-Bombarelli , R","venue":null,"work_id":null,"year":2022},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":7,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:16.944842Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:e004312ff754b065e65bc9d40e37ee09505ae03340384c41e6441c1d0a666205","observation_id":"466e262b-30eb-44ac-bcba-7dcf17c2b35f","resolution":{"observed_at":"2026-08-10T22:12:16.944842Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:17.022175Z","title":"R., Wang, J., Cong, Q., Kinch, L","venue":null,"work_id":null,"year":2021},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":8,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:17.022175Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:90d51914cf0e4fc04014f82f170c762676fbe66e9946f5fb7a0fb2982f03639f","observation_id":"3f1b5035-e6e9-4dc3-b9d6-e0989824c7ba","resolution":{"observed_at":"2026-08-10T22:12:17.022175Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:17.064765Z","title":"E(n) equivariant topological neural networks, July 2024","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":9,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:17.064765Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:4f17b5ebce84dc17b854d47134c5762295dbe0eeb7d8c6b63c0e77d7b4125978","observation_id":"e6d56153-ff84-47ae-a240-82ba92198ee2","resolution":{"observed_at":"2026-08-10T22:12:17.064765Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:17.114754Z","title":"P., Kornbluth, M., Molinari, N., Smidt, T","venue":null,"work_id":null,"year":2022},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":10,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:17.114754Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:a537635bc7af859f95a333e227bc129c1e669fe64ae5ea84c512143fce56d532","observation_id":"b593097e-76ea-486d-8db7-85d207fe384d","resolution":{"observed_at":"2026-08-10T22:12:17.114754Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":{"arxiv_id":"2203.06153","last_updated":"2022-03-11T18:27:04Z","snapshot_observed_at":"2026-08-16T17:15:14.665067Z","submitted_at":"2022-03-11T18:27:04Z","title":"Symmetry Group Equivariant Architectures for Physics","version":1},"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":"2203.06153","snapshot_observed_at":"2026-08-10T22:12:17.155923Z","title":"W., Murnane, D., Offermann, J","venue":null,"work_id":null,"year":2022},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":11,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:17.155923Z"},"links":{"cited_paper":"/paper/2203.06153","citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:f14f52d5f360e09e21f80af12fa38ac17e3b6b57f46fed053657f47f6ab1ea49","observation_id":"83c7c6de-f0ee-4aa4-bf2e-728dab80422e","resolution":{"observed_at":"2026-08-10T22:12:17.155923Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":{"arxiv_id":"2104.13478","last_updated":"2021-05-02T16:16:03Z","snapshot_observed_at":"2026-08-12T23:06:05.148534Z","submitted_at":"2021-04-27T21:09:51Z","title":"Geometric Deep Learning: Grids, Groups, Graphs, Geodesics, and Gauges","version":2},"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":"2104.13478","snapshot_observed_at":"2026-08-10T22:12:17.214753Z","title":"M., Bruna, J., Cohen, T., and Veli c kovi \\'c , P","venue":null,"work_id":null,"year":2021},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":12,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:17.214753Z"},"links":{"cited_paper":"/paper/2104.13478","citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:4553d4284071a41f8e34113cfb252f64081d4cbeff29249d571379cbb0004e36","observation_id":"5f3bef0a-6214-4003-9180-36f2646bcb17","resolution":{"observed_at":"2026-08-10T22:12:17.214753Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:17.264842Z","title":"M., and Deane, C","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":13,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:17.264842Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:a05a95470f013124c1b69c301cd50199be06b9b29955cd321423bbb4fdb6d3de","observation_id":"ebf188ce-66db-442e-b862-2fc35f9b056c","resolution":{"observed_at":"2026-08-10T22:12:17.264842Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:17.314237Z","title":null,"venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":14,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:17.314237Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:67c642f5092c8257f686573a6e7c36982e4642faf55603e06d3b6e2ccd6ff3d9","observation_id":"307f9d48-6389-4257-8219-b13f74fb61e0","resolution":{"observed_at":"2026-08-10T22:12:17.314237Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:17.354771Z","title":"An overview of diffusion models: Applications, guided generation, statistical rates and optimization, April 2024 a","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":15,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:17.354771Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:97d8769858d89188dab2b3828efb6b5d8ba9b1a58c3ce80cc19dd9ae77b9b237","observation_id":"56c55058-211e-4975-ba7e-e24dad5f0084","resolution":{"observed_at":"2026-08-10T22:12:17.354771Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:17.394909Z","title":"Amp-diffusion: Integrating latent diffusion with protein language models for antimicrobial peptide generation","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":16,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:17.394909Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:2e00160ec5d4113c0a52cb034c80fd899e62b85adf2cd89009946a714dfc44d7","observation_id":"e3ddc7fe-4c65-434f-9ac6-9a7630e65d4b","resolution":{"observed_at":"2026-08-10T22:12:17.394909Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:17.444833Z","title":"Amp-diffusion: Integrating latent diffusion with protein language models for antimicrobial peptide generation, March 2024 c","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":17,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:17.444833Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:aef0dafc1a41946931a60ec1b10a71006342e7a2b5efa8b8283dbd5914a19dff","observation_id":"413fade7-5d96-4be5-a6f3-2de642dbd67b","resolution":{"observed_at":"2026-08-10T22:12:17.444833Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:17.504848Z","title":"Ilvr: Conditioning method for denoising diffusion probabilistic models","venue":null,"work_id":null,"year":2021},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":18,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:17.504848Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:aecbc1c51ac75adebafdcc5206ebd9c9a758f5bea9221c60350cc087dfa96be1","observation_id":"017b87aa-bcb6-4f32-8c5e-f46a3067c749","resolution":{"observed_at":"2026-08-10T22:12:17.504848Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:17.536323Z","title":null,"venue":null,"work_id":null,"year":2021},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":19,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:17.536323Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:f237c4a955d312941043e9f3fb4cb8205bf54a16adeda43c854911f28691bd3f","observation_id":"93b2b1fa-72f4-4cfa-a363-24394ec5e6c3","resolution":{"observed_at":"2026-08-10T22:12:17.536323Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:17.585192Z","title":"The discovery of binding modes requires rethinking docking generalization","venue":null,"work_id":null,"year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":20,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:17.585192Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:579f3e59410b1e9c5b2fcde9ba629df9d196452440b5148670275eb78ab095f2","observation_id":"a0b66d6a-199f-4f8e-b4ec-7709df6d0e1c","resolution":{"observed_at":"2026-08-10T22:12:17.585192Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:17.636601Z","title":"Diffdock: Diffusion steps, twists, and turns for molecular docking, February 2023 b","venue":null,"work_id":null,"year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":21,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:17.636601Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:ad3241b981eafaa00d1a16a5a521b6a4489562d54778c3b743679af59b0a5ae2","observation_id":"af221b69-6115-4470-a916-4571c6800b87","resolution":{"observed_at":"2026-08-10T22:12:17.636601Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:17.679786Z","title":"Deep confident steps to new pockets: Strategies for docking generalization","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":22,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:17.679786Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:882c0316b764edfc6613f6b5159b254e5565f9712375d200dec864dd82b4d7b3","observation_id":"bdbb1105-edf1-47d0-a019-edf0017ec27e","resolution":{"observed_at":"2026-08-10T22:12:17.679786Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:17.714832Z","title":"T., and Shah, M","venue":null,"work_id":null,"year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":23,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:17.714832Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:079bdc41f9a8936631caab96a69eafedbeeaed0331edb07a25c5a3c0d1c9d112","observation_id":"ab70f958-72e6-4051-91ae-f3be1aae314b","resolution":{"observed_at":"2026-08-10T22:12:17.714832Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:17.763964Z","title":"and Koes, D","venue":null,"work_id":null,"year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":24,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:17.763964Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:a110ee85f93d26caa9cbdb7da3265e473c2f88c9753cd66e410c164b783c4bd1","observation_id":"3d2af078-9f40-47a1-9683-5c5c2c3e049b","resolution":{"observed_at":"2026-08-10T22:12:17.763964Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:17.794756Z","title":"Prottrans: Towards cracking the language of life's code through self-supervised learning, July 2020","venue":null,"work_id":null,"year":2020},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":25,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:17.794756Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:827dec57111aa867206cc06841148b75d82ecf57778a390247e759883e792803","observation_id":"ee97e170-9b02-4d59-b191-27b0cd024f60","resolution":{"observed_at":"2026-08-10T22:12:17.794756Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:17.849500Z","title":"Fabind+: Enhancing molecular docking through improved pocket prediction and pose generation, April 2024 a","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":26,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:17.849500Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:c5bb493760a9314277cfd78c8f4f6d9c66910661c037b956bd9e8d04e940494c","observation_id":"9c58194e-9f93-44d5-8454-a07d235cd693","resolution":{"observed_at":"2026-08-10T22:12:17.849500Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:17.874840Z","title":null,"venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":27,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:17.874840Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:48a06b9b759031aad31b13e1aab55892fd3ab7ca110d15df2fde0672b7a30ccd","observation_id":"06f62f11-fad9-432e-b2f5-5763e9151293","resolution":{"observed_at":"2026-08-10T22:12:17.874840Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:17.924833Z","title":"Editorial: Machine learning for peptide structure, function, and design","venue":null,"work_id":null,"year":2022},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":28,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:17.924833Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:5eba758d324fd3fc18eb6b1d2657a6f4e41eb44a4a080b64f337b4e832eb616b","observation_id":"e30812a8-8d91-48b8-ab02-517879d46e47","resolution":{"observed_at":"2026-08-10T22:12:17.924833Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:17.973855Z","title":"D., Uribe-Paredes , R., Olivera-Nappa , \\'A ., Navarrete, M","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":29,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:17.973855Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:1c21b2c793bbe47b404d824201f3c5a289a756e35ebf5de5a96551522ac9d6b6","observation_id":"357ae31f-1861-4481-bf2d-bd508fe2758b","resolution":{"observed_at":"2026-08-10T22:12:17.973855Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:18.002858Z","title":"W., Peng, X., Su, Y., Peng, J., and Ma, J","venue":null,"work_id":null,"year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":30,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:18.002858Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:c9070269b20ac3eccf49a60e5faa10108a3f534d8623e0be713961686e496bf1","observation_id":"b038b2b3-e316-4b04-a217-46edcd6b0018","resolution":{"observed_at":"2026-08-10T22:12:18.002858Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:18.054831Z","title":"Diffdock-site: A novel paradigm for enhanced protein-ligand predictions through binding site identification","venue":null,"work_id":null,"year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":31,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:18.054831Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:c2e90a00bfc314e7a589a9100d5e8a631f2a110807c34b2d339f38018c1c5c8c","observation_id":"7a813f31-4ec8-4dce-ba5e-2c71f6ddfd0e","resolution":{"observed_at":"2026-08-10T22:12:18.054831Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:18.094752Z","title":"Diffusion models in bioinformatics and computational biology","venue":null,"work_id":null,"year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":32,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:18.094752Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:881ba3bb96aeae27e67ec4d7fd119f6bd0b2aa2fa143d4ecf3726581011de3b0","observation_id":"ebafdfda-9efe-4b5e-b96e-71480119a006","resolution":{"observed_at":"2026-08-10T22:12:18.094752Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":"10.1002/prot.25431","metadata_source":"openalex","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-12T11:03:20.376878Z","title":"Continuous automated model evaluation (cameo) complementing the critical assessment of structure prediction in casp12","venue":"Proteins Structure Function and Bioinformatics","work_id":"a6ea28b7-a72a-461e-b966-75b8a3ac668f","year":2018},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":33,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:18.138615Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:1b9e27c5479d2e115dfec082ec30f6178ad6a25d977122eb1355d30e63a1382a","observation_id":"100f3115-cac1-483c-bfaa-48ea77d0cf14","resolution":{"observed_at":"2026-08-10T22:12:22.887231Z","resolver_source":"doi","status":"verified_exact"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:18.157910Z","title":"G., Vignac, C., and Welling, M","venue":null,"work_id":null,"year":2022},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":34,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:18.157910Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:4597bf6293236a7b5a255d8970de23da1913ce771fe80ef2fbf31ab5b8b90231","observation_id":"13833861-f8ba-486b-94a9-d2c984932081","resolution":{"observed_at":"2026-08-10T22:12:18.157910Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:18.207097Z","title":"Conditional diffusion based on discrete graph structures for molecular graph generation, May 2023 a","venue":null,"work_id":null,"year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":35,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:18.207097Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:1dad47ab91e79907a2eb7a2bc2865b8fcdb7cb41d7a480548242aba6f5887ab1","observation_id":"6cf70741-1cf5-42d8-818c-b84ee4345033","resolution":{"observed_at":"2026-08-10T22:12:18.207097Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:18.254841Z","title":"Learning joint 2d & 3d diffusion models for complete molecule generation, June 2023 b","venue":null,"work_id":null,"year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":36,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:18.254841Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:00f00df17ad2be4dc167905fd50eab5c100a17375186a2347a76d922bc5b06d9","observation_id":"815c3602-d0d1-48bb-a622-e3c5e001d18b","resolution":{"observed_at":"2026-08-10T22:12:18.254841Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:18.308451Z","title":"Mdm: Molecular diffusion model for 3d molecule generation, September 2022","venue":null,"work_id":null,"year":2022},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":37,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:18.308451Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:82cbd3b9cdc4f03afca90d228f44f98770fe212e9e13c719c316be0ecf967ff2","observation_id":"07e642fb-5759-42cf-9400-ef0a1849ec03","resolution":{"observed_at":"2026-08-10T22:12:18.308451Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:18.354915Z","title":"A dual diffusion model enables 3d molecule generation and lead optimization based on target pockets","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":38,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:18.354915Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:5f33ab1172d9e0fd8447c28dd9451402f94ba727ed37ae8b659fbacc901c75f1","observation_id":"2bce4c96-7194-4267-a46c-32e326110af9","resolution":{"observed_at":"2026-08-10T22:12:18.354915Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:18.402505Z","title":"G., Frossard, P., Welling, M., Bronstein, M., and Correia, B","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":39,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:18.402505Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:46834b95d695dca7739b174c7082d7e88a74904d46dc9e357e82224a1b34fe65","observation_id":"d81dcd36-e541-48c6-9828-2e3a42db2877","resolution":{"observed_at":"2026-08-10T22:12:18.402505Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:18.444697Z","title":"B., Baranov, M., Costello, Z., Barber, K","venue":null,"work_id":null,"year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":40,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:18.444697Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:6a4dabdbdaf0ddd2de9b04c99ec5da018139b15ac8a9d0d991f2d6424ec3fe3f","observation_id":"40c24e90-0476-4e29-884a-3275ebf462b0","resolution":{"observed_at":"2026-08-10T22:12:18.444697Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:18.498580Z","title":null,"venue":null,"work_id":null,"year":2022},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":41,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:18.498580Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:83d37c5056f1309a40575dd0f10bd3f752d69cb16a067ce02f54884c37097b8e","observation_id":"65457b38-4a78-4d46-aab2-9ef6a9bcb6b0","resolution":{"observed_at":"2026-08-10T22:12:18.498580Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:18.544756Z","title":null,"venue":null,"work_id":null,"year":2021},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":42,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:18.544756Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:6594981f0720fcc965f7ea1fcd0ba1342f8e2570ab5553742ada4e8c79ed6715","observation_id":"69bd5d65-3caf-49cf-a849-ea96b5c36a2c","resolution":{"observed_at":"2026-08-10T22:12:18.544756Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":{"arxiv_id":"2304.03889","last_updated":"2023-04-08T02:10:44Z","snapshot_observed_at":"2026-08-17T14:08:15.159748Z","submitted_at":"2023-04-08T02:10:44Z","title":"DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models","version":1},"cited_work":{"arxiv_id":"2304.03889","doi":null,"metadata_source":"pith","pith_arxiv_id":"2304.03889","snapshot_observed_at":"2026-08-10T22:12:23.841624Z","title":"DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models","venue":"q-bio.BM","work_id":"9a2d7a5c-5373-4188-918a-28e2e8919944","year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":43,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:18.594751Z"},"links":{"cited_paper":"/paper/2304.03889","citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:e834915440a94650085b2b2b713d340e2e1a5344fd349cebc84d7a133295de4b","observation_id":"67059281-d1da-4263-96ab-942f06f18f11","resolution":{"observed_at":"2026-08-10T22:12:23.874832Z","resolver_source":"local_arxiv","status":"metadata_mismatch"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:18.664833Z","title":"P., Salimans, T., Poole, B., and Ho, J","venue":null,"work_id":null,"year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":44,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:18.664833Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:16d07e157e2dc731cf5fae31471dd41897679693f227639c10262ecc06e7b429","observation_id":"0b132fd3-b106-4b53-952f-7d8d2288b851","resolution":{"observed_at":"2026-08-10T22:12:18.664833Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:18.714754Z","title":null,"venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":45,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:18.714754Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:11c1e98dc6cde11c604517f7a15e4d27804d10358e2da384a7242dd79201d021","observation_id":"1b359275-39bc-4fe0-9805-3ba0086d5756","resolution":{"observed_at":"2026-08-10T22:12:18.714754Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:18.784761Z","title":"E., Platen, E., Kloeden, P","venue":null,"work_id":null,"year":1992},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":46,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:18.784761Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:197a43139497efbc57422f629340639d2f3a8be3f452afef5de418b737265f89","observation_id":"18c211ae-b28f-47ad-beb2-ee3d662f732f","resolution":{"observed_at":"2026-08-10T22:12:18.784761Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:34.923731Z","title":"Full-atom peptide design with geometric latent diffusion, May 2024","venue":null,"work_id":"35317f11-c0af-44f1-a607-0bd4adac7d00","year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":47,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:18.824772Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:c3f5565867c9092b06e4cc5929ca5ae9d3028661d6dcc40c019e0aa9910b89d7","observation_id":"b8ad713f-7af2-49fe-8426-35bc40d5772e","resolution":{"observed_at":"2026-08-10T22:12:34.977128Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:34.778379Z","title":"Pinder: The protein interaction dataset and evaluation resource, July 2024","venue":null,"work_id":"98648148-2a79-4c93-a33a-922cd385998d","year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":48,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:18.864829Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:0f6e0afbb5318c3b19f0d92a3457b0c2c1922fb607bc31ab9345bb2d14508611","observation_id":"eea5fdbd-fe38-4869-8f52-88fbee7ac787","resolution":{"observed_at":"2026-08-10T22:12:34.824773Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:18.915310Z","title":"R., Morey-Burrows, F","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":49,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:18.915310Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:cbb1fa7d66c6623476ef6a56a526fab3e286c126ed605c55c5938afe3085eb0c","observation_id":"e8a384b6-80c7-4970-8746-f47fd3365396","resolution":{"observed_at":"2026-08-10T22:12:18.915310Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:34.526194Z","title":"Equivariant graph attention networks for molecular property prediction, March 2022","venue":null,"work_id":"cd1ebd31-6501-4f05-9886-5004337557bd","year":2022},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":50,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:18.954863Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:9e1348096d75af015dd140f1587039e827deae3be4e7d36fde673e7c1cfd2c02","observation_id":"ed0095ea-07ae-4f60-96a8-9054c4082444","resolution":{"observed_at":"2026-08-10T22:12:34.574754Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":{"arxiv_id":"2309.17296","last_updated":"2023-11-24T16:08:38Z","snapshot_observed_at":"2026-08-16T14:56:29.374867Z","submitted_at":"2023-09-29T14:53:05Z","title":"Navigating the Design Space of Equivariant Diffusion-Based Generative Models for De Novo 3D Molecule Generation","version":2},"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":"2309.17296","snapshot_observed_at":"2026-08-10T22:12:19.004838Z","title":"Navigating the design space of equivariant diffusion-based generative models for de novo 3d molecule generation","venue":null,"work_id":null,"year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":51,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:19.004838Z"},"links":{"cited_paper":"/paper/2309.17296","citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:2f76d0f091e7c20938d01dcea9b5673d3102e30b769fd2fd91042a6f71500266","observation_id":"69c0caf7-3129-4af9-946c-0e6a0af8078f","resolution":{"observed_at":"2026-08-10T22:12:19.004838Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:34.324758Z","title":"Navigating the design space of equivariant diffusion-based generative models for de novo 3d molecule generation","venue":null,"work_id":"caec14f8-ba9d-48b7-afac-3fb84bb1c850","year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":52,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:19.054933Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:20555155f06e3059c0f14f9a1fb972ffc95ee9dd415cd2ca55a9a21a12e0e6e3","observation_id":"6c657e2c-1592-45ad-ad02-910afe003d2b","resolution":{"observed_at":"2026-08-10T22:12:34.374763Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:34.171254Z","title":"On the generalization properties of diffusion models, January 2024 a","venue":null,"work_id":"87a78342-975e-45c3-aa40-1b911c1bb2b6","year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":53,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:19.114935Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:e748cd2b9c886042f4bfac7ef9568e95a3050539a6768dd6417e1ff81b54d83b","observation_id":"c3df153c-d2ac-4635-a60f-71d3618f2a42","resolution":{"observed_at":"2026-08-10T22:12:34.212993Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:33.985361Z","title":"On the generalization properties of diffusion models, January 2024 b","venue":null,"work_id":"d9c139d1-a9b9-495c-98e4-8096b7b08bc0","year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":54,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:19.164855Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:59792413813c0fb8ea15a8c33bd09897efdea8c2830e5d28a31c5488b838c6d9","observation_id":"fc6d1331-9deb-4327-bb48-c742d989a6d7","resolution":{"observed_at":"2026-08-10T22:12:34.024754Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:33.804758Z","title":null,"venue":null,"work_id":"2bd75ef8-9dde-4933-bae8-4e4cb2a84bdd","year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":55,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:19.214823Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:cfc71cd1e3067176c02dda0ec46b8b0734776671be34cb25628c6ff9a6431ceb","observation_id":"cde247cc-4fad-4972-b35d-50d1296a7743","resolution":{"observed_at":"2026-08-10T22:12:33.865489Z","resolver_source":"raw_fallback","status":"unresolved"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:33.674752Z","title":"and AlQuraishi, M","venue":null,"work_id":"dd6f3a88-b8f4-4797-a0b4-40bbd3db206f","year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":56,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:19.257077Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:78b81c6d74e372d1118fec4334e4cd5d93c960676b40d4f7574b3a0e1c26706f","observation_id":"5d6f9e2d-665c-4810-81d4-aee9db0061c0","resolution":{"observed_at":"2026-08-10T22:12:33.720826Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:33.503892Z","title":"Out of many, one: Designing and scaffolding proteins at the scale of the structural universe with genie 2, May 2024 b","venue":null,"work_id":"d34b86fb-1398-4b02-8b88-10abc4ed4c41","year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":57,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:19.305079Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:edf0fcc980cea01c409596af16215332e87b846831a621a8dcfd7d8d649b270c","observation_id":"6d28d742-6d98-4300-9c1a-7e57fd6a7077","resolution":{"observed_at":"2026-08-10T22:12:33.554758Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:19.354851Z","title":"Evolutionary-scale prediction of atomic-level protein structure with a language model","venue":null,"work_id":null,"year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":58,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:19.354851Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:5ff77dfd4882207ee67746b3911d27db3a389c6dec428272c5232d207b4c5fb3","observation_id":"d733b116-4316-4f72-98f4-1880b0a68a88","resolution":{"observed_at":"2026-08-10T22:12:19.354851Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:33.226009Z","title":"L., Gershon, J","venue":null,"work_id":"5a7d3015-eb55-46fa-8186-d76cf0a56631","year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":59,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:19.410474Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:64f32f60b0a66c33632baf85c732ea2ead4167b341327188ec17ae18aa109ee4","observation_id":"49b22505-4399-4dc9-945a-0c4ae46dc9a2","resolution":{"observed_at":"2026-08-10T22:12:33.284875Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:33.055141Z","title":"L., Shijo, S., Bera, A","venue":null,"work_id":"05e6999a-a19d-4508-8e32-1e8ddd0c806b","year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":60,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:19.444900Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:f6386a549651e0b79f484960bc6fb42b6ba127617ca3899a613adda8e46707eb","observation_id":"742b4928-6cee-4a40-86d5-178321251a10","resolution":{"observed_at":"2026-08-10T22:12:33.114756Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:32.895338Z","title":"G., and Zheng, S","venue":null,"work_id":"58854073-4fb5-4bec-a7ec-6da6aa874b19","year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":61,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:19.495313Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:ab4740bfcb65b2b2546a4d16e1c4c8409da5cea3f3a6ff3f3703cff71c71511f","observation_id":"a1a9fcc2-3ffd-4aec-a360-183ad2fddd14","resolution":{"observed_at":"2026-08-10T22:12:32.944917Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:32.755100Z","title":null,"venue":null,"work_id":"ed24fe72-b03f-4697-ba64-00ab7d120cdc","year":2009},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":62,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:19.544833Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:5572c4bd48a8a33711488f8a18430b9c520046246ad4a8435e78fc13403bd175","observation_id":"5d2fbdf7-e1d0-4915-8f19-0bb3291c7d23","resolution":{"observed_at":"2026-08-10T22:12:32.804906Z","resolver_source":"raw_fallback","status":"unresolved"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:32.574746Z","title":"Y., Chen, H., and Shen, C","venue":null,"work_id":"43ca016f-c22d-483e-843e-6686f4514e48","year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":63,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:19.584928Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:31b4e59ded7488086a56f2e3974428f4902e561d76756c7394521f1f72c86ecc","observation_id":"095b954a-f85b-4daa-ab48-c8006ce72d0d","resolution":{"observed_at":"2026-08-10T22:12:32.624761Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:32.415091Z","title":"J., Bau, D., Vullo, A., Walsh, I., and Pollastri, G","venue":null,"work_id":"8dde1753-ad4f-4edb-b0bd-9fcbec0eebce","year":2008},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":64,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:19.641998Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:a8702dbf4ca93c21dd47f0bcdf726ef6a97a6067650f8c2d0096fb1f76d0668e","observation_id":"28d9a7e0-7a2a-410e-95f1-dd51d5d39a77","resolution":{"observed_at":"2026-08-10T22:12:32.464750Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:32.294752Z","title":"W., Pitt, W","venue":null,"work_id":"b96441ef-7f8a-4590-9168-abdb3f4cf67b","year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":65,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:19.674773Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:d7bff00cf3ece913cff6b0cf233a5820a7137cc725555aa530e0104ae7c32d22","observation_id":"385f9e62-ec45-45bc-ba5a-51649aa99b4c","resolution":{"observed_at":"2026-08-10T22:12:32.335827Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:32.231035Z","title":"and Cheng, J","venue":null,"work_id":"44967704-2a70-439e-a92a-86b11ee3be25","year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":66,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:19.725562Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:0b609af53bf82e0d81c654d920c043602d2d6b80fa225f0938e3defd31ef26b5","observation_id":"c1070fa0-306c-4f21-a1a0-83a546d52011","resolution":{"observed_at":"2026-08-10T22:12:32.242069Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:32.131402Z","title":"A brief survey on bio inspired optimization algorithms for molecular docking, July 2014","venue":null,"work_id":"b29d4991-7367-4c2b-a54b-84222c29c99a","year":2014},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":67,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:19.767612Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:9018a935dc54739c03663fbebc4fa0684c738d49d0b93f19ee1278c5efb44617","observation_id":"f7a10070-832d-44d7-b3ee-b850acdfe54c","resolution":{"observed_at":"2026-08-10T22:12:32.150963Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:31.983130Z","title":"S., Mills, J","venue":null,"work_id":"f25c49a2-c923-420e-9f58-32d7f070d6e5","year":2012},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":68,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:19.824748Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:c4162de2f72b535b2656d70cdf692d64d3ceecee9c9d5b43a4db06b17fac7b99","observation_id":"ddf9849f-effc-4f06-aa8b-5defb5eed538","resolution":{"observed_at":"2026-08-10T22:12:32.024142Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:31.764762Z","title":"L., and Buehler, M","venue":null,"work_id":"46b971b5-a90c-4047-a0d7-b3f1691ea0ab","year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":69,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:19.874757Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:d98ce8d997f44d94cc77dd243ca21201e1b08f5816f85321fb2ceffe49b315a2","observation_id":"be3569d2-d758-48d9-8cf1-46ab58c83875","resolution":{"observed_at":"2026-08-10T22:12:31.824673Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:31.614753Z","title":"L., and Buehler, M","venue":null,"work_id":"ed039b7c-8c38-4972-a50c-14f0341bb40b","year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":70,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:20.074767Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:b21c316bad14e861eb5ad9b82f12d5efd5c096f73f8fd5de22594816fad27e00","observation_id":"4ffa3bc5-3aeb-4c25-a417-f20e0b8ee6f5","resolution":{"observed_at":"2026-08-10T22:12:31.654908Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:31.434839Z","title":"Permutation invariant graph generation via score-based generative modeling, March 2020","venue":null,"work_id":"d15ef9f3-da3b-46bc-a699-47770f5b2a63","year":2020},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":71,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:20.124755Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:819625e2e0b433d44469b42dfdec06e9b5330d72378e1a23163113815cc15ecd","observation_id":"93431602-e370-4cd6-80c4-d4769ba6792b","resolution":{"observed_at":"2026-08-10T22:12:31.484836Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":{"arxiv_id":"2406.01622","last_updated":"2024-05-31T21:39:51Z","snapshot_observed_at":"2026-08-16T13:47:16.260291Z","submitted_at":"2024-05-31T21:39:51Z","title":"Sifting through the Noise: A Survey of Diffusion Probabilistic Models and Their Applications to Biomolecules","version":1},"cited_work":{"arxiv_id":"2406.01622","doi":null,"metadata_source":"pith","pith_arxiv_id":"2406.01622","snapshot_observed_at":"2026-08-10T22:12:23.465051Z","title":"Sifting through the Noise: A Survey of Diffusion Probabilistic Models and Their Applications to Biomolecules","venue":"q-bio.BM","work_id":"27016e62-7264-43cd-9579-07a6f3387fa4","year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":72,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:20.194762Z"},"links":{"cited_paper":"/paper/2406.01622","citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:c99c31a8cba8efe2c69dd34d88053372a49449f26980666366f6aca8539426a3","observation_id":"ff74557a-9c92-4aff-9212-45c5de1934ff","resolution":{"observed_at":"2026-08-10T22:12:23.514755Z","resolver_source":"local_arxiv","status":"verified_exact"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:31.304764Z","title":"and Xie, S","venue":null,"work_id":"0cfef106-f15e-4b39-a166-6f7859ce63ef","year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":73,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:20.244753Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:af2550ba2b090cc307da323622d86aef1966c09cdefae555a5fda97d49d1ec4a","observation_id":"5dd2aafd-ab09-441d-b2ae-80cdce07d7d5","resolution":{"observed_at":"2026-08-10T22:12:31.351352Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:31.174756Z","title":"Fabind: Fast and accurate protein-ligand binding, January 2024","venue":null,"work_id":"8f494d87-6490-4069-846f-7c7922e13330","year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":74,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:20.304785Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:34c8a2db954a5d36df0f32336e76787790ce92f851b823b5cbefb0a7881bc8ed","observation_id":"0903dd48-7f13-4646-8d40-9437b7793d76","resolution":{"observed_at":"2026-08-10T22:12:31.211054Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:31.071399Z","title":"Moldiff: Addressing the atom-bond inconsistency problem in 3d molecule diffusion generation, May 2023","venue":null,"work_id":"19620a6e-8350-4632-a036-7247b9de1d0c","year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":75,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:20.386230Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:500191803a99f2f4babb882e87b1fddc87fb96412fea81a3772d29ed75de3120","observation_id":"e44b6e78-cad8-4ac9-ba9a-deeabaae3f4b","resolution":{"observed_at":"2026-08-10T22:12:31.104139Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:30.974893Z","title":null,"venue":null,"work_id":"9f93a9c6-367f-46b2-aaae-bfd20ea818ef","year":2002},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":76,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:20.434874Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:a71e4a282c7ef9dbfa461242b7b2a7842d34db5b8d23942ade45056e4b19e3e0","observation_id":"e164df2c-a5c0-4822-b3df-fa9998d23faa","resolution":{"observed_at":"2026-08-10T22:12:31.004916Z","resolver_source":"raw_fallback","status":"unresolved"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:30.824757Z","title":"O., Jamasb, A., Mahmood, O., Sresht, V., and Saremi, S","venue":null,"work_id":"714685c6-22a8-4f8d-85b1-b607a353b25a","year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":77,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:20.493198Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:c5bb68a34bd559aacefc3fb6e0cb2cd17cc81ff46680d863bbd0563d231b094a","observation_id":"93164486-763a-4960-98b6-2588f6cf321f","resolution":{"observed_at":"2026-08-10T22:12:30.864846Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:30.671763Z","title":"F., and Anandkumar, A","venue":null,"work_id":"3319c666-c4bb-48d3-91c6-2e95243ede5e","year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":78,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:20.544847Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:5f7faab7f74d5f723dc3ea143e8c54aa4ffa8045522a17f21150ccfc3debe572","observation_id":"698fd8a8-93f7-4569-b3ff-54d92c704aa5","resolution":{"observed_at":"2026-08-10T22:12:30.714759Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:30.536347Z","title":"O., Rupp, M., and Von Lilienfeld, O","venue":null,"work_id":"475c102a-f19c-4ab0-a4ce-1b09174b0f16","year":2014},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":79,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:20.585260Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:057adcaff0b34b7c2d47cc2ca3ecb32760d8c7e08ee3da924366248f5e48431e","observation_id":"dac1e891-9373-4769-9f07-5a888f53774b","resolution":{"observed_at":"2026-08-10T22:12:30.567083Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:30.420616Z","title":"High-resolution image synthesis with latent diffusion models, April 2022","venue":null,"work_id":"2a8ea108-31a8-428d-a19c-c1d6f1494fad","year":2022},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":80,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:20.644419Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:1fe293198079af1d6529d9eadeb4cd776962c9637a89ee21dd551a277de92061","observation_id":"39f49f39-2b11-4b44-9753-b47cdba72811","resolution":{"observed_at":"2026-08-10T22:12:30.449237Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:30.275103Z","title":null,"venue":null,"work_id":"a7c3ca5b-0d7d-4c67-babb-161c4b99307a","year":2019},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":81,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:20.715645Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:b774c921e2d170a4d0865fb8a39694c70e32a88e670ea9e47bf0e9b3b28679a8","observation_id":"70d3d462-b493-44a5-9b48-97d511466a51","resolution":{"observed_at":"2026-08-10T22:12:30.323740Z","resolver_source":"raw_fallback","status":"unresolved"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:30.130449Z","title":null,"venue":null,"work_id":"f134117d-ba3c-4384-99f6-da1572297a63","year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":82,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:20.784864Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:46519a78afff45237e5b6e2fce00325519fb506f2c651c1be552dd8124cdccef","observation_id":"daeae042-4a34-4298-871b-76bbc8474223","resolution":{"observed_at":"2026-08-10T22:12:30.175219Z","resolver_source":"raw_fallback","status":"unresolved"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:29.975047Z","title":"G., Hoogeboom, E., and Welling, M","venue":null,"work_id":"c6a6b033-6d65-4432-b25e-436513e09f17","year":2022},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":83,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:20.844861Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:29150a32c51ea32eea2225976032db63fcc38eec7b09d7abcda15196c95c7520","observation_id":"d2296fdb-11d8-42bc-a24f-4dc44a66da5f","resolution":{"observed_at":"2026-08-10T22:12:30.024836Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:29.795092Z","title":"Structure-based drug design with equivariant diffusion models, June 2023","venue":null,"work_id":"f931a378-d1fb-4ae8-a092-a3c9bda936f0","year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":84,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:20.887681Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:4d631319517de218c303e6caa76c216997f71a5b354e9264baf0695c180eb71e","observation_id":"5898e329-aba3-4fd4-a79c-fb0062ec69a5","resolution":{"observed_at":"2026-08-10T22:12:29.844935Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":{"arxiv_id":"2404.07194","last_updated":"2024-04-10T17:50:29Z","snapshot_observed_at":"2026-08-16T14:01:59.456394Z","submitted_at":"2024-04-10T17:50:29Z","title":"VN-EGNN: E(3)-Equivariant Graph Neural Networks with Virtual Nodes Enhance Protein Binding Site Identification","version":1},"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":"2404.07194","snapshot_observed_at":"2026-08-10T22:12:20.928575Z","title":"Vn-egnn: E (3)-equivariant graph neural networks with virtual nodes enhance protein binding site identification","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":85,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:20.928575Z"},"links":{"cited_paper":"/paper/2404.07194","citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:44b46d6f9d152a1366e1ab6a3a99ea760df7be5706337e81c258f1491e2c536d","observation_id":"0f28283c-f4c8-4bfe-b8ec-4fcdae4c981c","resolution":{"observed_at":"2026-08-10T22:12:20.928575Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:29.624843Z","title":"Denoising diffusion implicit models, October 2022","venue":null,"work_id":"3aefb8c9-17af-468e-93f9-f4d0a7000bd7","year":2022},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":86,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:20.967106Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:322d16f3c41ecb71b6609a003400fced9f851c1b4ac27098b66408260ea796da","observation_id":"c7990c3d-7deb-4eba-98c9-278de9cefc55","resolution":{"observed_at":"2026-08-10T22:12:29.684755Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":{"arxiv_id":"2011.13456","last_updated":"2021-02-10T18:17:04Z","snapshot_observed_at":"2026-07-06T02:11:23.670680Z","submitted_at":"2020-11-26T19:39:10Z","title":"Score-Based Generative Modeling through Stochastic Differential Equations","version":2},"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":"2011.13456","snapshot_observed_at":"2026-08-10T22:12:21.011295Z","title":"P., Kumar, A., Ermon, S., and Poole, B","venue":null,"work_id":null,"year":2011},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":87,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:21.011295Z"},"links":{"cited_paper":"/paper/2011.13456","citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:27051acdd3c275d517b661e7ff771ca1f2ee0d585c9985a94ba626f827645fce","observation_id":"2fb555c2-9630-48c9-9cbd-4f3f929e334c","resolution":{"observed_at":"2026-08-10T22:12:21.011295Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:29.436468Z","title":"A survey of generative ai for de novo drug design: new frontiers in molecule and protein generation","venue":null,"work_id":"f41c428b-89ed-41bd-82c2-f6a8a02ba4e4","year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":88,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:21.056707Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:d20d5394beefdf7e341b7a9c4f58e230f040ea06c6043b25e1101b405c7c5618","observation_id":"8d48f5c4-4e8d-490f-b9ce-f9631618d039","resolution":{"observed_at":"2026-08-10T22:12:29.494920Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:29.260371Z","title":"A survey of generative ai for de novo drug design: New frontiers in molecule and protein generation","venue":null,"work_id":"22808f20-f607-41f9-a85d-a79a8a7bac4c","year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":89,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:21.124830Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:7362ab8ecc6a82c6992651f33d7e38382717f144a904f26b3e014c690c2eecd0","observation_id":"a5f9a697-048c-449d-9c11-b686601fe9ad","resolution":{"observed_at":"2026-08-10T22:12:29.304757Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:29.094846Z","title":"L., Yim, J., Tischer, D., Baker, D., Broderick, T., Barzilay, R., and Jaakkola, T","venue":null,"work_id":"b408bf49-7793-49a0-b09a-9dbfbfe2e1d4","year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":90,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:21.184753Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:bc272abf72125e35021fe2703be24c9ab21acd91fcc69f00d8b732048b57a18e","observation_id":"d496f79f-5028-4111-9a87-b9698e624bdd","resolution":{"observed_at":"2026-08-10T22:12:29.144779Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:28.935030Z","title":"P., Yumoto, A., Ito, Y., Uzawa, T., and Tsuda, K","venue":null,"work_id":"e58f1c52-cd33-4a55-a1fd-65dd5f72c357","year":2020},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":91,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:21.294845Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:64ce0cfbfe245041d95c85937318d3466db5df3df271df097bff2a0e515136e7","observation_id":"e241a19b-376b-4640-8b20-37594813ef45","resolution":{"observed_at":"2026-08-10T22:12:28.993583Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:28.753749Z","title":null,"venue":null,"work_id":"9da332c3-28a2-43c8-a957-843989e19f04","year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":92,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:21.326546Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:3636c1819bb35f04a6c8b508e687736acfc7278037eb7f798b6945bf3be3b38d","observation_id":"9cfad1bc-c96d-4c48-94f0-1962edec5d95","resolution":{"observed_at":"2026-08-10T22:12:28.805204Z","resolver_source":"raw_fallback","status":"unresolved"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:28.575098Z","title":"Digress: Discrete denoising diffusion for graph generation, May 2023 a","venue":null,"work_id":"d0dca9a4-99ba-404a-a166-b8e970142b46","year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":93,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:21.379114Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:0eb6895369298ed0b234976ee00066591077c3d88bead1a063e961238328254b","observation_id":"2be44aff-b05d-4466-921c-5e542e46f53c","resolution":{"observed_at":"2026-08-10T22:12:28.624838Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:28.424839Z","title":"Midi: Mixed graph and 3d denoising diffusion for molecule generation, June 2023 b","venue":null,"work_id":"0c17056e-87f4-4d82-a35c-7314b08815e0","year":2023},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":94,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:21.418680Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:744ab6e3968985084131f3fa1ad3b78c8695b7051f976db8fc3bdd7ba2565f9d","observation_id":"8a97bbe0-ebf7-4b9a-b9d3-7c18befc2a4d","resolution":{"observed_at":"2026-08-10T22:12:28.472266Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:28.260915Z","title":"Deep generative models for peptide design","venue":null,"work_id":"1546d77a-9f48-4902-80d3-81c3ea09d3d2","year":2022},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":95,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:21.454898Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:77a705eb61cffbaa945642040713dc313dfc181d74eebd402cdd079a1b0319af","observation_id":"e4bb4b9b-14d6-41aa-be95-c38801bfe62b","resolution":{"observed_at":"2026-08-10T22:12:28.314173Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:28.124277Z","title":"Pdb-struct: A comprehensive benchmark for structure-based protein design","venue":null,"work_id":"d4e4fb68-95f2-4622-963b-2b71d11a8aaf","year":null},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":96,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:21.483389Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:2af42ea4f7eff3ecff327727e2e1e171192a02c57ef13d0bb6635c8b9de9865e","observation_id":"5d008fbf-e4d2-4437-94e6-5627ef05ebe9","resolution":{"observed_at":"2026-08-10T22:12:28.174759Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:27.964901Z","title":"Therapeutic peptides: Current applications and future directions","venue":null,"work_id":"3309dd09-3fe7-4bd7-a392-8468357569c7","year":2022},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":97,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:21.494883Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:a686e491796b5b12c8c16da3722d9f13190e46a31f00c48a500ec2ddc16407fb","observation_id":"01d857d2-8764-4d16-8968-3fe8c886f8f6","resolution":{"observed_at":"2026-08-10T22:12:28.014886Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:27.821619Z","title":"Diff-amp: Tailored designed antimicrobial peptide framework with all-in-one generation, identification, prediction and optimization","venue":null,"work_id":"2a3af073-e9fa-4f6f-b724-6299f2d0ce79","year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":98,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:21.548592Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:63750bbf220be514fb658610c4df3c36566978dc84b2993a1f933510a1b6c3c7","observation_id":"06a357ef-1892-4259-b0e5-61158a6d2bec","resolution":{"observed_at":"2026-08-10T22:12:27.864835Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":{"arxiv_id":"2410.13782","last_updated":"2024-10-17T17:20:24Z","snapshot_observed_at":"2026-08-16T13:08:19.313636Z","submitted_at":"2024-10-17T17:20:24Z","title":"DPLM-2: A Multimodal Diffusion Protein Language Model","version":1},"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":"2410.13782","snapshot_observed_at":"2026-08-10T22:12:21.604147Z","title":"Dplm-2: A multimodal diffusion protein language model","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":99,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:21.604147Z"},"links":{"cited_paper":"/paper/2410.13782","citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:e6ac0c7458ac312fdef6b0b52649a0ed7b3aa899663170a3b393f844e4815d23","observation_id":"6747c029-47af-46ae-96c3-0dc56d87e0e3","resolution":{"observed_at":"2026-08-10T22:12:21.604147Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T22:12:27.693001Z","title":"Diffusion language models are versatile protein learners, February 2024 c","venue":null,"work_id":"c5917c1e-0688-4cb6-b08c-06fe5d6c57c5","year":2024},"citing_paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering","version":1},"reference_index":100,"source":"arxiv_source","source_observed_at":"2026-08-10T22:12:21.655239Z"},"links":{"citing_paper":"/paper/2501.02680"},"observation_digest":"sha256:9bbc1351fef5048795a042c9825d9bc7ef3979dcbf9a5be9eecb2d0b78d28e81","observation_id":"45c4d10f-3597-4f0b-9ced-e8e6ff1bd0ba","resolution":{"observed_at":"2026-08-10T22:12:27.734886Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"state":"measured"}}],"paper":{"arxiv_id":"2501.02680","last_updated":"2025-01-05T22:36:43Z","latest_version":1,"primary_category":"q-bio.QM","snapshot_observed_at":"2026-08-14T00:48:46.685491Z","submitted_at":"2025-01-05T22:36:43Z","title":"From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering"},"reference_resolution":{"displayed":100,"state_counts":{"malformed_identifier":0,"metadata_mismatch":1,"parse_uncertain":0,"unresolved":56,"verified_exact":2,"verified_fuzzy":41},"total_outbound_references":121},"refusal":"A citation records a reference. It does not transfer a finding from one paper to another.","schema":"pith.paper-citation-record.v1","standing_sources":[{"observed_at":"2026-08-17T06:30:58.91139+00:00","source":"crossref"},{"observed_at":"2026-08-17T06:30:54.323127+00:00","source":"retraction_watch"}],"thesis":"As of 17 August 2026, this Paper Citation Record lists 100 of 121 outbound references and 3 inbound Pith citation observations for arXiv:2501.02680."}