{"as_of":"2026-08-08T12:27:00Z","caps":{"database_statements":6,"inbound":100,"outbound":100},"context_digest":"sha256:d17e010aa8c29615b3d9b03b093181ccf93a2c8bf66c5f4b1b52540137cccf1d","coverage":[{"denominator":121,"lane":"reference_resolution","note":"Typed states for the displayed outbound observations.","records_observed":100,"source":"paper_references, paper_reference_links","source_observed_at":"2026-08-07T13:40:15.052259Z","state":"measured"},{"denominator":100,"lane":"standing_notices","note":"One-hop event checks from named stored sources.","records_observed":100,"source":"scholarly_work_events, retraction_status_cache","source_observed_at":"2026-08-08T06:32:00.761636+00:00","state":"measured"},{"denominator":0,"lane":"inbound_itemization","note":"Pith citing papers itemized under the disclosed page cap.","records_observed":0,"source":"paper_references, paper_reference_links","source_observed_at":null,"state":"measured"},{"denominator":1,"lane":"external_citation_measurements","note":"A source-named dated measurement, never combined with another source.","records_observed":0,"source":"cited_works","source_observed_at":null,"state":"measured"}],"external_citation_measurements":[],"inbound":[],"links":{"evidence":"/evidence","html":"/paper/2505.21452/citation-record","integrity":"/paper/2505.21452/integrity","json":"/paper/2505.21452/citation-record.json","paper":"/paper/2505.21452"},"outbound":[{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:53.847180Z","title":"write newline","venue":null,"work_id":null,"year":null},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":1,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:53.847180Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:c2982c71691ce89946f35f80030b0794124822d2f18ece7a10d64a62e907f704","observation_id":"19533fdb-9b10-4712-87e6-f8231fe13de9","resolution":{"observed_at":"2026-08-07T13:35:53.847180Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:53.905264Z","title":"J., Bambrick, J., et al","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":2,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:53.905264Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:fe6c86a23ac9b791cfbe3921a51cca155baa0a34aca7336b16fdea7a316fe351","observation_id":"09d6d7dd-80ba-4932-96d1-14dee272da68","resolution":{"observed_at":"2026-08-07T13:35:53.905264Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:54.019198Z","title":"F., Leaver-Fay, A., Jeliazkov, J","venue":null,"work_id":null,"year":2017},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":3,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:54.019198Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:83a26aa301f05d47707ad713e5d01d4b8fbe37da7c298eab20b9d70fac06af16","observation_id":"cb4238d3-3d44-46c4-acce-d852107870f1","resolution":{"observed_at":"2026-08-07T13:35:54.019198Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:54.127300Z","title":"R., Wang, J., Cong, Q., Kinch, L","venue":null,"work_id":null,"year":2021},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":4,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:54.127300Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:b1d587f2bde7911e2131a095826bd93eb4b4113fc99d6a65a4af47433a565ab0","observation_id":"a9b3c302-276c-4280-96b7-46dbbf6648fa","resolution":{"observed_at":"2026-08-07T13:35:54.127300Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:54.214042Z","title":"M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T","venue":null,"work_id":null,"year":2000},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":5,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:54.214042Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:5b944250d8930388d66d834420852fee67b612ed5542b39ac212597882b18bb9","observation_id":"62237f0a-afa7-45fe-8b70-5e6e60e64e98","resolution":{"observed_at":"2026-08-07T13:35:54.214042Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:54.306175Z","title":"K., Bahl, C","venue":null,"work_id":null,"year":2016},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":6,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:54.306175Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:69e6a79312d17507682e83ed7c8d72770949e944547890b85903825f6b39c37c","observation_id":"d03a377b-ece1-4e30-a2c0-fc4f368864c1","resolution":{"observed_at":"2026-08-07T13:35:54.306175Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:54.384812Z","title":"A., Mulligan, V","venue":null,"work_id":null,"year":2022},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":7,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:54.384812Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:5467a87c87cb4b7db6f81f95e210aee450ed0d7a5d7d40243a0472552ed4db25","observation_id":"b098c5df-bf2f-42f9-be72-62f1efc90ec9","resolution":{"observed_at":"2026-08-07T13:35:54.384812Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":{"arxiv_id":"2310.07051","last_updated":"2024-09-26T22:27:36Z","snapshot_observed_at":"2026-07-06T16:30:50.253688Z","submitted_at":"2023-10-10T22:26:41Z","title":"Score-Based Generative Models for Designing Binding Peptide Backbones","version":3},"cited_work":{"arxiv_id":"2310.07051","doi":null,"metadata_source":"pith","pith_arxiv_id":"2310.07051","snapshot_observed_at":"2026-08-07T13:40:18.517863Z","title":"Score-Based Generative Models for Designing Binding Peptide Backbones","venue":"q-bio.BM","work_id":"32328557-36c5-485f-a153-a75e40f9fa7c","year":2023},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":8,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:54.491776Z"},"links":{"cited_paper":"/paper/2310.07051","citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:b6720a7937ea149b839e5aeb92f08b21875ce58b01043f770de9a2d2a6dd098d","observation_id":"6210c752-9b37-4a35-92dd-bb5d89de4343","resolution":{"observed_at":"2026-08-07T13:40:18.640589Z","resolver_source":"local_arxiv","status":"metadata_mismatch"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:54.574288Z","title":"K., Rahimi, M","venue":null,"work_id":null,"year":2021},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":9,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:54.574288Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:34ba7f989084630d0874441dc49a67cffd750097810e01d41588d0363e23249f","observation_id":"ad14c263-f10e-4285-abf8-14e5b6b1ac0b","resolution":{"observed_at":"2026-08-07T13:35:54.574288Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:54.750385Z","title":"K., Bhikadiya, C., Bi, C., Bittrich, S., Chao, H., Chen, L., Craig, P","venue":null,"work_id":null,"year":2023},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":10,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:54.750385Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:aecb3a0b1f4eaaca1a4f08893b0412385b33721fd5ec1154d327177673f1f332","observation_id":"f326b2c5-3082-446e-a79d-55d82e0d9b80","resolution":{"observed_at":"2026-08-07T13:35:54.750385Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:54.904876Z","title":null,"venue":null,"work_id":null,"year":1999},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":11,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:54.904876Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:54a6395dd048e435703a482db87fa67f5b29b741bbbdb738c48d034789c9f9eb","observation_id":"cdeb6484-7d7c-4c93-aa5d-21f7da0e784a","resolution":{"observed_at":"2026-08-07T13:35:54.904876Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:54.984861Z","title":"Generative flows on discrete state-spaces: Enabling multimodal flows with applications to protein co-design","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":12,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:54.984861Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:ca31a0d9ce94dc85343180800278a0fe64198242c2f98123858ebe5851b4393a","observation_id":"8cad5717-98db-4bd3-8f64-227093a86db2","resolution":{"observed_at":"2026-08-07T13:35:54.984861Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:55.098243Z","title":"Surfdock is a surface-informed diffusion generative model for reliable and accurate protein--ligand complex prediction","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":13,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:55.098243Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:a18d3f61d7cc68d0230147d776997fd3ab8b3c27da055941547a0950fc0f885a","observation_id":"7865538f-e80e-4b20-9dc7-7702a66fe0a6","resolution":{"observed_at":"2026-08-07T13:35:55.098243Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:55.165281Z","title":"S., Jude, K","venue":null,"work_id":null,"year":2022},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":14,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:55.165281Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:b1af48d513bcea5fcf4d5a98f06c8f62afe4ce970731034639ce3b8e0886fab1","observation_id":"a9889472-e119-448d-ae9c-f3f4b826e285","resolution":{"observed_at":"2026-08-07T13:35:55.165281Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:55.317344Z","title":"E., Pavel, M., \\'C wik a, J","venue":null,"work_id":null,"year":2014},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":15,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:55.317344Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:1d45b948e0a2f9455fc665fcfc002dc882bc90be7095dc1eb3095f12b8988aea","observation_id":"ef74d712-229f-44a0-8070-a3b2e2153b55","resolution":{"observed_at":"2026-08-07T13:35:55.317344Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:55.479555Z","title":null,"venue":null,"work_id":null,"year":2010},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":16,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:55.479555Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:0ef59f7a9bf8cc3332a334e18ccf13cf4cde3e669d6c9ee1cbc177be2935c565","observation_id":"bf379e50-6d0c-4bfd-9fd4-5e5deafae3eb","resolution":{"observed_at":"2026-08-07T13:35:55.479555Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:55.553167Z","title":"An all-atom generative model for designing protein complexes","venue":null,"work_id":null,"year":2025},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":17,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:55.553167Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:aa8041f9e97cadc09f475256667dfe6f041663b4d7a372500bcd05e7201c35d3","observation_id":"9ac0049f-cb6a-4540-beb9-aebe4311f5bf","resolution":{"observed_at":"2026-08-07T13:35:55.553167Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:55.682334Z","title":"Pep MLM : Target sequence-conditioned generation of peptide binders via masked language modeling","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":18,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:55.682334Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:ccde5ba960e9c6ab0e47e5aa57e349eda43c888592c1c032dce1337163152d1a","observation_id":"1148fb78-1576-4946-9b91-1b3293f70897","resolution":{"observed_at":"2026-08-07T13:35:55.682334Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:55.801652Z","title":"Decomposed direct preference optimization for structure-based drug design","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":19,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:55.801652Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:3539d1839801cd512165b137ae18168e219b180f965598bd6fab3ba16c9e3214","observation_id":"9b2b80dd-1b71-42a2-a118-057bb4a6941b","resolution":{"observed_at":"2026-08-07T13:35:55.801652Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:55.870552Z","title":"E., Kim, J., Cheng, L., El Nesr, G., Xu, M., Shuai, R","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":20,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:55.870552Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:d3ff038fcd5c69e05f7145fc77798d8842090a5bcc780b75fd064c5574e0707d","observation_id":"5528f26d-7dbb-4df2-af98-0d65464b01cf","resolution":{"observed_at":"2026-08-07T13:35:55.870552Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:55.939639Z","title":null,"venue":null,"work_id":null,"year":2023},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":21,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:55.939639Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:b0c715428ae592235efcc4dc45f46e0c7b193a3e811e114e263b99a831fa1631","observation_id":"6d5a2b9f-2353-433d-bc32-c498b97dba58","resolution":{"observed_at":"2026-08-07T13:35:55.939639Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:56.038489Z","title":"Cyclic peptides in pipeline: what future for these great molecules? Pharmaceuticals, 16 0 (7): 0 996, 2023","venue":null,"work_id":null,"year":2023},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":22,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:56.038489Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:322a8b9dcd62ff7f6e6d3d9b328eaec3f1fb0ab73a379f94083244efd9a88741","observation_id":"af0e3190-c7a1-45fc-a39b-09ab4e49dbbd","resolution":{"observed_at":"2026-08-07T13:35:56.038489Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:56.135036Z","title":"S., and Trievel, R","venue":null,"work_id":null,"year":2005},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":23,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:56.135036Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:c497d9a9bdd0f372201ae630b44807dfb346e5e077d165f20ca120563a15453c","observation_id":"e13fddaf-d036-408d-8d26-4fadabdba3db","resolution":{"observed_at":"2026-08-07T13:35:56.135036Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:56.218525Z","title":"J., Milles, L","venue":null,"work_id":null,"year":2022},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":24,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:56.218525Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:d64717cf5f9a8d7ff2f1b04da8631a19824b9f976069d3f7ad4115b4d08235e4","observation_id":"26ec4e49-1d35-409d-bbdc-f3848fe4d482","resolution":{"observed_at":"2026-08-07T13:35:56.218525Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:56.303029Z","title":"and Nichol, A","venue":null,"work_id":null,"year":2021},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":25,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:56.303029Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:5be307761b5a7b8a3c77fa1ae5366e704e93f8168aecbb9c6bb1ac6b7ebc8126","observation_id":"43fea840-3711-4092-804c-f1089cf0ffc9","resolution":{"observed_at":"2026-08-07T13:35:56.303029Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:56.386886Z","title":"J., Czodrowski, P., Li, H., Nielsen, J","venue":null,"work_id":null,"year":2007},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":26,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:56.386886Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:c59ffc4396d2e4088c882777979f5c6c2718a97493344c63fbabc3ca79d744a2","observation_id":"7619e84c-2477-4d11-b31f-2b6fba905dbe","resolution":{"observed_at":"2026-08-07T13:35:56.386886Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:56.471578Z","title":"M., Hale, S","venue":null,"work_id":null,"year":2008},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":27,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:56.471578Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:41979c52045c28d3a397667976b034bc1f240648a9a0d1baa60d50ea505fec12","observation_id":"2ed05efd-6112-4196-bdc6-1f5118eceeac","resolution":{"observed_at":"2026-08-07T13:35:56.471578Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:56.564923Z","title":"F., and Forli, S","venue":null,"work_id":null,"year":2021},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":28,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:56.564923Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:edb95051bbe950baf861bf60ee60deb6ae83b35f77bf5406a2704786c99debc3","observation_id":"1eb12439-b0a5-4bb6-9465-85f1aa2c50e8","resolution":{"observed_at":"2026-08-07T13:35:56.564923Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:56.681454Z","title":null,"venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":29,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:56.681454Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:5067c2ee5a803c13e8af0ad823439c9438b9997971c1f786da1394c6c5f9abfe","observation_id":"8dcfe51e-5763-43e4-9418-745cab4444cb","resolution":{"observed_at":"2026-08-07T13:35:56.681454Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:56.776721Z","title":"Disulfide bonding in protein biophysics","venue":null,"work_id":null,"year":2012},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":30,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:56.776721Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:9e3ea5f97b15e1f6e4ae15d1e972d452d3c98eed513cba5d9559427003a1200d","observation_id":"e277a287-f936-40f5-84f2-df0f3ee86566","resolution":{"observed_at":"2026-08-07T13:35:56.776721Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:56.876297Z","title":"A., Banks, J","venue":null,"work_id":null,"year":2004},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":31,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:56.876297Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:b67f8f8053707fe0fcd4669bcb78483143c1c99c04e1ef024fc6c62d121cc912","observation_id":"10efc69b-9805-4ca0-955a-c1970b6ad4f0","resolution":{"observed_at":"2026-08-07T13:35:56.876297Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:56.947988Z","title":null,"venue":null,"work_id":null,"year":2023},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":32,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:56.947988Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:a9a1c205b43ded93dd4df42d8dfa0e6d263702f270e8ce1edc454449e5df0017","observation_id":"2b111637-33ae-4164-bce9-e5185fa907b7","resolution":{"observed_at":"2026-08-07T13:35:56.947988Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:57.084496Z","title":null,"venue":null,"work_id":null,"year":2023},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":33,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:57.084496Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:6ff17525bc673735a799b4ea860b2b4247e73e563bd043993736418421645f1c","observation_id":"dff356a5-6c6c-4602-ab7f-8915dfb9ff78","resolution":{"observed_at":"2026-08-07T13:35:57.084496Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:57.253950Z","title":"Macrocycles in drug discovery-learning from the past for the future","venue":null,"work_id":null,"year":2023},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":34,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:57.253950Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:7ecbcecc33c2a42a18e02bca31305982ff5addd25f98e14f0729e2ab014b49b2","observation_id":"5c594bc8-f88c-4520-a22d-954dd77e75de","resolution":{"observed_at":"2026-08-07T13:35:57.253950Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:57.432249Z","title":"and Kihlberg, J","venue":null,"work_id":null,"year":2014},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":35,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:57.432249Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:a725c51d77fefc4ffb9251d80ceb359f4f38429c13fe05d2767ea7c1cba046ed","observation_id":"cffc6419-4dce-441c-ad4c-acc0fd3a3152","resolution":{"observed_at":"2026-08-07T13:35:57.432249Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:57.575052Z","title":"W., Ma, W.-Y., Ma, J., and Peng, J","venue":null,"work_id":null,"year":2021},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":36,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:57.575052Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:291a0d3c36dbdc5aeb4c39b26944710d765754cc5733371775955fe92d82c57f","observation_id":"ec1e7258-119c-4339-baa3-5189fc9ffc47","resolution":{"observed_at":"2026-08-07T13:35:57.575052Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":{"arxiv_id":"2501.15055","last_updated":"2025-01-25T03:36:17Z","snapshot_observed_at":"2026-07-06T20:25:58.814961Z","submitted_at":"2025-01-25T03:36:17Z","title":"Group Ligands Docking to Protein Pockets","version":1},"cited_work":{"arxiv_id":"2501.15055","doi":null,"metadata_source":"pith","pith_arxiv_id":"2501.15055","snapshot_observed_at":"2026-08-07T13:40:18.005926Z","title":"Group Ligands Docking to Protein Pockets","venue":"q-bio.BM","work_id":"f9f1e29c-5fb5-440d-9bd0-59976f864a80","year":2025},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":37,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:57.653804Z"},"links":{"cited_paper":"/paper/2501.15055","citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:031f4bd7f16e7b3636022e05bf3a3a32721f71a01405956307a5b4a1aaed909f","observation_id":"f826053b-5acb-439b-adcd-635e0251ccf6","resolution":{"observed_at":"2026-08-07T13:40:18.118220Z","resolver_source":"local_arxiv","status":"verified_exact"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":{"arxiv_id":"2207.12598","last_updated":"2022-07-26T01:42:07Z","snapshot_observed_at":"2026-07-06T02:11:23.670680Z","submitted_at":"2022-07-26T01:42:07Z","title":"Classifier-Free Diffusion Guidance","version":1},"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":"2207.12598","snapshot_observed_at":"2026-08-07T13:35:57.739724Z","title":"and Salimans, T","venue":null,"work_id":null,"year":2022},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":38,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:57.739724Z"},"links":{"cited_paper":"/paper/2207.12598","citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:b4f916dffd9b073d476617657ddf94630d5f09ffec08e2fa9c91222d5bf94a09","observation_id":"8b994e75-2136-4daf-bf8a-75732d944c8f","resolution":{"observed_at":"2026-08-07T13:35:57.739724Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:57.837766Z","title":"Denoising diffusion probabilistic models","venue":null,"work_id":null,"year":2020},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":39,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:57.837766Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:eeb398ec6421a9e03909b0ededfd72c28bd56208d18a132373364bff7878903f","observation_id":"22719b0f-9a0b-43d9-aff0-6f52dbed95f0","resolution":{"observed_at":"2026-08-07T13:35:57.837766Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:57.992025Z","title":"W., Le Grand, S., Walker, R","venue":null,"work_id":null,"year":2015},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":40,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:57.992025Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:64233d593dd6f756cae970e2beaecd0bb0adc4c38aacb0a807a73096206be963","observation_id":"5840bc68-e8d9-493a-940e-5c78c91cb8e7","resolution":{"observed_at":"2026-08-07T13:35:57.992025Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:58.092113Z","title":"R., Craven, T","venue":null,"work_id":null,"year":2021},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":41,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:58.092113Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:552de8246ebd57a8aa9951c28fe4699bea52aa4297e12960b4f99f6591b1b5f6","observation_id":"dc00505c-d6de-41c4-aa99-57c7e3a0790a","resolution":{"observed_at":"2026-08-07T13:35:58.092113Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:58.180757Z","title":"Learning inverse folding from millions of predicted structures","venue":null,"work_id":null,"year":2022},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":42,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:58.180757Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:19e070951b7e52ed96201ac45e643e697cbf15eccac3f87363444dc3aa113d55","observation_id":"908be3f9-cc50-4d32-a70e-3243dc8697a5","resolution":{"observed_at":"2026-08-07T13:35:58.180757Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:58.290975Z","title":null,"venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":43,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:58.290975Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:730f29403fcbaef88ae964e948e694969884eb37808681bc3e8ab21f555e8477","observation_id":"5f9f8361-fff5-403f-9d2b-e9fbeed4d820","resolution":{"observed_at":"2026-08-07T13:35:58.290975Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:58.453465Z","title":"Generative models for graph-based protein design","venue":null,"work_id":null,"year":2019},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":44,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:58.453465Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:8ccfb41ec74f96a0f6e8398c5f9eb7d72f43f2fe43fa8fd0d740030fcca2889b","observation_id":"96ec9fc7-8b8d-4879-a546-b6964a56148f","resolution":{"observed_at":"2026-08-07T13:35:58.453465Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:58.599531Z","title":"Structural insights into estrogen receptor methylation by histone methyltransferase smyd2, a cellular event implicated in estrogen signaling regulation","venue":null,"work_id":null,"year":2014},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":45,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:58.599531Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:247ea3f90b1ddd08c6ee7c632f3844f16bf6cf846efb206cbe8bc8cb68cb1350","observation_id":"e2d9b9ad-75b5-471c-9047-3b4b03ac677e","resolution":{"observed_at":"2026-08-07T13:35:58.599531Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:26.826177Z","title":null,"venue":null,"work_id":"218f730e-c073-4341-a7e5-27419610ab3c","year":2022},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":46,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:58.612948Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:7a91c331a428c8be885164401ce87496423cc3be2b2b53cc0ff05d68d59bc705","observation_id":"26ffaa05-7ead-4052-ba43-e61422205794","resolution":{"observed_at":"2026-08-07T13:40:26.953884Z","resolver_source":"raw_fallback","status":"unresolved"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:26.620776Z","title":null,"venue":null,"work_id":"9d1dfbd4-6ed1-4232-99ae-2fe76f76a2a4","year":2021},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":47,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:58.629815Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:c30fbe34a33894995b72e5166c99f24c10adbfa855f4a1157730f4de0081aae5","observation_id":"42f696b0-f39c-4517-96a0-9b37ad0d13e0","resolution":{"observed_at":"2026-08-07T13:40:26.754838Z","resolver_source":"raw_fallback","status":"unresolved"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:26.313913Z","title":null,"venue":null,"work_id":"6c3688ca-5b10-4b6f-804c-8884a72b4e48","year":2023},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":48,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:58.716715Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:95f8b48e4cb1c9e558b76c5da41bb8a2f0025edfe618ec1fcc25624cc984d25a","observation_id":"6c5dcc09-3aa8-4eda-921a-ef21ef20db65","resolution":{"observed_at":"2026-08-07T13:40:26.458120Z","resolver_source":"raw_fallback","status":"unresolved"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:58.752640Z","title":"L., Chandrasekhar, J., Madura, J","venue":null,"work_id":null,"year":1983},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":49,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:58.752640Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:8c6da62022d80f43f922c9c0fcdca8d1b0be6286a482f020f78a23eb1d675800","observation_id":"fbaa6d0e-e0c5-4bc0-88c2-4463e5eeecad","resolution":{"observed_at":"2026-08-07T13:35:58.752640Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:26.013158Z","title":"S., Villequey, C., Kong, X.-D., Zorzi, A., Deyle, K., and Heinis, C","venue":null,"work_id":"fb24e2df-a053-4ea3-ad83-29f3e7cfdf65","year":2018},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":50,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:58.789659Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:e5ac1b73505ddd34636b08f5b946319941fe125efa071ecbf83b7c2e2003eeb0","observation_id":"d3a25fe7-612c-4bc2-92e4-a25991f27e15","resolution":{"observed_at":"2026-08-07T13:40:26.176476Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:25.835580Z","title":"N., Passioura, T., et al","venue":null,"work_id":"0fefce5d-f62d-41b8-b8a2-a377c8272c3f","year":2017},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":51,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:58.883094Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:66b7d909bfa6fd092563aad940cdb531cd11900c92cda377e1ccb0e74e9583c6","observation_id":"63386bbe-1f2f-4f8d-bf7e-34ecf00f9873","resolution":{"observed_at":"2026-08-07T13:40:25.906757Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:25.637255Z","title":"End-to-end full-atom antibody design","venue":null,"work_id":"65bbf659-6c29-4f8e-acaa-e7eeabee3ca4","year":2023},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":52,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:58.956847Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:2bf51ab4319ff0a7ce1aed1f4b6640a3f0bc4c21e90db1daede27de70a31cecf","observation_id":"7afd6c03-3d94-433a-9d7c-4c7d93260f63","resolution":{"observed_at":"2026-08-07T13:40:25.726467Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:25.454912Z","title":"Full-atom peptide design with geometric latent diffusion","venue":null,"work_id":"6091b4cd-a553-472b-b12b-75eca289f3cf","year":2024},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":53,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:59.075184Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:10541334a97cdca557c1e083d35f9b34d01cc7b34b0028a3d585ab1d5cb5eef9","observation_id":"2cf0f7aa-842d-42aa-9fc1-7418eaf3b0d4","resolution":{"observed_at":"2026-08-07T13:40:25.526438Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:59.146719Z","title":"R., Morey-Burrows, F","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":54,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:59.146719Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:40505c251aa588ed23a021cddfa529da068262e5b9994e60ec15125b9db355bf","observation_id":"2e383179-6846-4ade-9ac3-2ceefa8c5aae","resolution":{"observed_at":"2026-08-07T13:35:59.146719Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":{"arxiv_id":"2406.05832","last_updated":"2024-09-09T17:20:01Z","snapshot_observed_at":"2026-07-06T18:27:50.189771Z","submitted_at":"2024-06-09T15:50:35Z","title":"Improving Antibody Design with Force-Guided Sampling in Diffusion Models","version":2},"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":"2406.05832","snapshot_observed_at":"2026-08-07T13:35:59.226923Z","title":"V., Wang, Y","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":55,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:59.226923Z"},"links":{"cited_paper":"/paper/2406.05832","citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:621d98239d34dee2437b951d302ac15eeee507e34ea3354b113b078c9717a57e","observation_id":"42537ca8-f06c-4359-994a-c0a257a90dbb","resolution":{"observed_at":"2026-08-07T13:35:59.226923Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:25.279564Z","title":"Full-atom peptide design based on multi-modal flow matching","venue":null,"work_id":"d4c1ce85-d3c1-45c5-b527-86da5784010c","year":2025},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":56,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:59.359100Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:ba11ffa42c58251db2325b3461c6150959c8fd264ecb7427d7db720f80f210bf","observation_id":"cda7e92e-5163-4f47-9205-7fc6fe1c1725","resolution":{"observed_at":"2026-08-07T13:40:25.368038Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:25.090298Z","title":"Delineating the stepwise millisecond allosteric activation mechanism of the class c gpcr dimer mglu5","venue":null,"work_id":"a517970d-6261-45a1-a517-d1e2ff3fe6a1","year":2024},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":57,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:59.529565Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:b1f559d5e9c8d8c7be8387964e4d4aa01c39f1343c1f7921a255715f14ac4f62","observation_id":"643f10d4-596a-4265-a375-9402546072b7","resolution":{"observed_at":"2026-08-07T13:40:25.184480Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:24.934784Z","title":null,"venue":null,"work_id":"1c1a328b-85fe-47c4-afc3-816c80651b6f","year":2025},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":58,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:59.643724Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:4812ec8213bf912cdfcd719f7482173396d81d7e100bffceec1f942ff9328fca","observation_id":"de1dd2f1-0ea9-4607-afd6-50ae9ca25c3e","resolution":{"observed_at":"2026-08-07T13:40:25.004059Z","resolver_source":"raw_fallback","status":"unresolved"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:59.801053Z","title":"Evolutionary-scale prediction of atomic-level protein structure with a language model","venue":null,"work_id":null,"year":2023},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":59,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:59.801053Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:5de957310d3e73af7ccea5e68104500fad42351b52dd77e399337799c1a9cd10","observation_id":"bbb03d23-bbb0-4e5c-a46e-8b361368185f","resolution":{"observed_at":"2026-08-07T13:35:59.801053Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:35:59.918670Z","title":"L., Gershon, J","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":60,"source":"arxiv_source","source_observed_at":"2026-08-07T13:35:59.918670Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:ab893b633abb3ccfd68a488a07ef20db1d0c7282424eeea23d089f8f24579c8d","observation_id":"815ad384-d20f-4729-bca6-b093d64b46b0","resolution":{"observed_at":"2026-08-07T13:35:59.918670Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:24.797404Z","title":"Cyclicpepedia: a knowledge base of natural and synthetic cyclic peptides","venue":null,"work_id":"1cd99f06-295f-4981-a750-cfac3b07987a","year":2024},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":61,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:00.007549Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:29eac7f5eb6c44853b48c54d62c542d28f778577d79ea7cfd91ecf6ebe35f490","observation_id":"9c905ab0-8ddc-4e66-bd2a-2386c33b1c46","resolution":{"observed_at":"2026-08-07T13:40:24.848627Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":{"arxiv_id":"1711.05101","last_updated":"2019-01-04T21:01:49Z","snapshot_observed_at":"2026-07-06T02:11:23.670680Z","submitted_at":"2017-11-14T14:24:06Z","title":"Decoupled Weight Decay Regularization","version":3},"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":"1711.05101","snapshot_observed_at":"2026-08-07T13:36:00.099185Z","title":"Decoupled weight decay regularization","venue":null,"work_id":null,"year":2017},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":62,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:00.099185Z"},"links":{"cited_paper":"/paper/1711.05101","citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:61a9268b85b95cd32f63320ea9b1f07b637f08969ca1eb278b98fba8d0c7341c","observation_id":"2aaf24ea-9b1d-43b1-b44f-fb194d7ee557","resolution":{"observed_at":"2026-08-07T13:36:00.099185Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:24.683627Z","title":"Contrastive energy prediction for exact energy-guided diffusion sampling in offline reinforcement learning","venue":null,"work_id":"61c83b97-df80-46f0-8247-ee4791ec9324","year":2023},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":63,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:00.202529Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:426eddd9462ab48a28fd4d55dcf95df92b72521617279221c72770ed78432fe9","observation_id":"8bb85e8a-fac6-4de0-8074-6ae914de4975","resolution":{"observed_at":"2026-08-07T13:40:24.738507Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:36:00.332395Z","title":"Tankbind: Trigonometry-aware neural networks for drug-protein binding structure prediction","venue":null,"work_id":null,"year":2022},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":64,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:00.332395Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:80b73facd2c7143ac4b14d5e560a695b5fd18a2a1347f701dc605e688b359231","observation_id":"e48cbfac-9c37-4426-a5ec-e736b79fed72","resolution":{"observed_at":"2026-08-07T13:36:00.332395Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:24.523792Z","title":"G., and Zheng, S","venue":null,"work_id":"9f4a3945-2d7f-4310-ac2b-ce29dd24cee9","year":2024},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":65,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:00.406203Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:6e252a912205e28615883d2d13b252ea2fcfc4a7e903b1d54ffde16291a9814d","observation_id":"2b835502-e4f3-4b83-9a3e-b018f886e095","resolution":{"observed_at":"2026-08-07T13:40:24.572219Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:36:00.517843Z","title":"Antigen-specific antibody design and optimization with diffusion-based generative models for protein structures","venue":null,"work_id":null,"year":2022},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":66,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:00.517843Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:cc2d637640356a6eaf44af61d54df1c46461a72a9a8393a00691cb801af03238","observation_id":"05b3a59c-4e84-439b-b277-dfd930338f63","resolution":{"observed_at":"2026-08-07T13:36:00.517843Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:36:00.614497Z","title":"R., Subramanian, S., Mohr, B","venue":null,"work_id":null,"year":2023},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":67,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:00.614497Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:a3b07b9746a0a505d6f595adf3b028c26e0629c7684bfa18d67b9a411de29c0b","observation_id":"53c76035-53b7-4aab-8247-dd911506cf3f","resolution":{"observed_at":"2026-08-07T13:36:00.614497Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:36:00.744102Z","title":"A., Martinez, C., Kasavajhala, K., Wickstrom, L., Hauser, K","venue":null,"work_id":null,"year":2015},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":68,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:00.744102Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:a0bfb0d49a89a008c2e41b4a235972907c052a384cd130b9be13c74ab9254ff4","observation_id":"009886d3-78f5-486d-ba88-330b0aabc8e4","resolution":{"observed_at":"2026-08-07T13:36:00.744102Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:24.343201Z","title":"K., Wang, T., Zupancic, J","venue":null,"work_id":"e01b0410-4223-47bd-b1d4-534636aa3a2c","year":2024},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":69,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:00.906151Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:27f802764a9d65e8e4f620eb15eb17e606e512c6a1872e9376b992d777383503","observation_id":"b64d0bbb-6dd0-4703-ab12-e1907ab0b2fd","resolution":{"observed_at":"2026-08-07T13:40:24.410554Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:24.190772Z","title":"Y., Chen, H., and Shen, C","venue":null,"work_id":"efbdc0b6-c485-4158-8778-3d0dbef169ce","year":2024},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":70,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:01.054875Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:5f28d91a89456c53f02fa00cb83dc4211e2e62ba2b75d663e7f8813fae054f30","observation_id":"21f9b87f-25e5-4a8f-ad41-b763d9366da1","resolution":{"observed_at":"2026-08-07T13:40:24.252822Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:24.009810Z","title":"Abdiffuser: full-atom generation of in-vitro functioning antibodies","venue":null,"work_id":"cdf34158-eaf5-455b-a05d-41d94ec7db3c","year":2023},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":71,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:01.116913Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:c6920e51c76586abd4b546a334c14fb0a2a2b9c6a2c4026e31b4aed390394bc1","observation_id":"1d7f6cdb-e617-4434-8b12-fdad0fd96104","resolution":{"observed_at":"2026-08-07T13:40:24.100061Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:23.727584Z","title":"C., Bastos, L","venue":null,"work_id":"e9073361-8f18-416f-888d-bf62aa8ebe0e","year":2023},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":72,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:01.236682Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:9329788cabdaffb196ead2384ba1223ac1bd424fb228bb6b8d4f7eba002cc171","observation_id":"00d4cf98-80f7-4ce8-b99e-f6c7d2327228","resolution":{"observed_at":"2026-08-07T13:40:23.864143Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:23.589536Z","title":"L., Habeshian, S., Li, B., David, J.-A","venue":null,"work_id":"09f6c291-3c35-4f7c-a800-f9b4316ca9ae","year":2024},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":73,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:01.339404Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:67e0e844685c768c24846f217a9447eac9642e6aee6f2853cdce19dc351d8d89","observation_id":"1e46d337-c8e5-44bc-8ea8-458fee8b57cc","resolution":{"observed_at":"2026-08-07T13:40:23.636597Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:23.447946Z","title":"and Suga, H","venue":null,"work_id":"0149e706-3a8a-437e-9bb9-5ff1ac3153b6","year":2021},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":74,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:01.466757Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:67930678edf8c48a21b945322c1e8e0f427e06b1511de30b6f725dc4f8611b47","observation_id":"6f2d55d5-aa6e-47be-9874-005d205fba93","resolution":{"observed_at":"2026-08-07T13:40:23.527007Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:36:01.581296Z","title":"Fabind: Fast and accurate protein-ligand binding","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":75,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:01.581296Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:6770479e59a4865c8c73d4a0812fd3bd9b6182ecc8b6069e62485621b347f5ad","observation_id":"72e6c512-94b6-433a-a367-1a106f6ec051","resolution":{"observed_at":"2026-08-07T13:36:01.581296Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:23.322458Z","title":"and Zhou, M","venue":null,"work_id":"c762e088-3bf9-4043-baba-5ba90e400e4a","year":2006},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":76,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:01.751464Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:32a9db3d2cbb0819a4c3699c8ccb77950a4c21f66ae8f07c4a8738e91276f8fa","observation_id":"c2392c3e-21da-4862-b9ff-b4c02b8c7da0","resolution":{"observed_at":"2026-08-07T13:40:23.368022Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:36:01.936849Z","title":"F., and Anandkumar, A","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":77,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:01.936849Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:af9df282bc65dc272a20a04684931314147ae9516f56b047634ca26bbe052957","observation_id":"cbb48981-005a-423f-82a8-6fd3484bc125","resolution":{"observed_at":"2026-08-07T13:36:01.936849Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:36:02.080772Z","title":"F., Zhao, Q., Leveille, A., Liu, A., Bera, A., Wilms, J., \\\"U ffing, A., et al","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":78,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:02.080772Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:3d2c59148e9f012e6ea16af7e32e04203a3cb2e1509d0ff1ef92cb3723000d74","observation_id":"ae793358-5e04-4a77-8f3e-4946d6eba5d0","resolution":{"observed_at":"2026-08-07T13:36:02.080772Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:36:02.196108Z","title":"L., Ma, J., et al","venue":null,"work_id":null,"year":2021},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":79,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:02.196108Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:b4a0a4a78492b9a0d2400808d6338d02eda6e2903edd63fed7557f3ab4531176","observation_id":"7291c95b-31a6-4c75-a896-b4778c5579fc","resolution":{"observed_at":"2026-08-07T13:36:02.196108Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:36:02.288106Z","title":null,"venue":null,"work_id":null,"year":1977},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":80,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:02.288106Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:c571c657705c911e852475ed80118cf67442683630cebd1ed4b1aad062864987","observation_id":"1f85abcf-7cf1-4230-918e-ac6b6ee05533","resolution":{"observed_at":"2026-08-07T13:36:02.288106Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:36:02.394307Z","title":"W., Poole, D., Le Grand, S., and Walker, R","venue":null,"work_id":null,"year":2013},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":81,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:02.394307Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:fd0deed2298db55cd94a65c82380a685a48a89197cab52b35c46eb48d7059e34","observation_id":"cc93fb67-8ddf-4b23-8d68-0a6e7a893449","resolution":{"observed_at":"2026-08-07T13:36:02.394307Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:36:02.479857Z","title":"and Solin, A","venue":null,"work_id":null,"year":2019},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":82,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:02.479857Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:0df430696d4e852810a5b59f6e55b74d964cd012c7dff1f56626c886275f91b2","observation_id":"398ea7dc-2895-4bda-b6a2-af58dad95a3b","resolution":{"observed_at":"2026-08-07T13:36:02.479857Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:36:02.652772Z","title":"G., Hoogeboom, E., and Welling, M","venue":null,"work_id":null,"year":2021},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":83,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:02.652772Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:f1baef89fe9941206bb4a8f5112044c053272464fd060ced290e986404803ae7","observation_id":"359c2c7b-24ab-427f-aa84-58236dc2ad00","resolution":{"observed_at":"2026-08-07T13:36:02.652772Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:23.146974Z","title":"K., Sharma, A., and Jain, R","venue":null,"work_id":"da3e7736-c8e8-4b5e-9c09-072993c84b80","year":2023},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":84,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:02.822616Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:b0a175fc22a00067d1fdc8b064f0fbdb33dbad6aa798265be94359a1b9613934","observation_id":"7459f127-a11f-459d-ba0f-b114db7efa4b","resolution":{"observed_at":"2026-08-07T13:40:23.190666Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:36:02.901873Z","title":"and Ermon, S","venue":null,"work_id":null,"year":2019},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":85,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:02.901873Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:81cbfd27869f753c61ec156881fcf1374498698f26e78a670a4277249484c55a","observation_id":"88fa483e-f125-4481-ab00-65b947f7d72a","resolution":{"observed_at":"2026-08-07T13:36:02.901873Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:36:02.956966Z","title":"P., Kumar, A., Ermon, S., and Poole, B","venue":null,"work_id":null,"year":2021},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":86,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:02.956966Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:8e94d7cd36cab08028d9a1d4fed9213677e74f98a9d2ab2f8d444c3c8b5ba6d4","observation_id":"b763cd8c-6db6-44cf-aaae-b472e5b2ab73","resolution":{"observed_at":"2026-08-07T13:36:02.956966Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:36:03.052785Z","title":"Equibind: Geometric deep learning for drug binding structure prediction","venue":null,"work_id":null,"year":2022},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":87,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:03.052785Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:29a133ce18872a80d505e9ea2060e969f50c4a0da882e4f5c3a05c404c2a3507","observation_id":"30332dde-ef0d-4f7f-b292-3a573539a700","resolution":{"observed_at":"2026-08-07T13:36:03.052785Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:22.959980Z","title":"Harmonic prior self-conditioned flow matching for multi-ligand docking and binding site design","venue":null,"work_id":"d06b0f64-f608-424b-8b99-c83c9503bf27","year":2023},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":88,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:03.198131Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:9dbdf3e2f7dbda041a1b76468c3c35f60fd136904ae1d7912b987bc933f58927","observation_id":"66c5cbae-b775-4653-b838-cc496caf56b5","resolution":{"observed_at":"2026-08-07T13:40:23.018678Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:22.846705Z","title":"Peptune: De novo generation of therapeutic peptides with multi-objective-guided discrete diffusion","venue":null,"work_id":"f5714f79-72e3-4a73-a4e2-fcb9cc5c5efc","year":2025},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":89,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:03.312605Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:ba7bca49066f920bd9f08c4001c63e744f4dc49085cef3922cde5ac198faa363","observation_id":"4e317122-d101-4d22-808d-087e2bd15e3e","resolution":{"observed_at":"2026-08-07T13:40:22.892682Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:36:03.401347Z","title":"K., Avraham, O., Ben-Aharon, Z., Khramushin, A., and Schueler-Furman, O","venue":null,"work_id":null,"year":2022},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":90,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:03.401347Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:4d76cfe55817ad6d33422973cc31d8158dec66b865855229606451b30d7e286f","observation_id":"1cae6f29-6cdb-4f72-9610-61348f48b32d","resolution":{"observed_at":"2026-08-07T13:36:03.401347Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:22.687246Z","title":"Peptide therapeutics: targeting the undruggable space","venue":null,"work_id":"90159d27-88d5-468c-a161-2b997fe583d7","year":2015},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":91,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:03.494805Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:a46f5604b2acbeb122bff83060373cb33831a77b9621af20d5a6e8f491a909ac","observation_id":"bda0d1be-f42d-42b9-b488-ac701bd1601e","resolution":{"observed_at":"2026-08-07T13:40:22.761133Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:22.570128Z","title":null,"venue":null,"work_id":"fd0e56ed-44b8-41d5-b8ea-97880261fea8","year":2022},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":92,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:03.624554Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:d057ac73a18886300216d420044099b0626c5dfbe9ff8e11d0bc1538ddb8abe9","observation_id":"dfca12b5-07d5-4911-ad8e-1c9260aee78a","resolution":{"observed_at":"2026-08-07T13:40:22.621479Z","resolver_source":"raw_fallback","status":"unresolved"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:22.393370Z","title":"A., Yin, Y., and Suga, H","venue":null,"work_id":"c862e656-04af-43cd-ac94-d6f94a8b2fda","year":2019},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":93,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:03.713435Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:b4ad2362e614a033946bfc50e2772053f9ae16c14d2debbe785bf2073c2e6dc8","observation_id":"d6cada4d-a122-4f9f-930d-3d2286d336df","resolution":{"observed_at":"2026-08-07T13:40:22.470722Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:22.236675Z","title":"Z., and Hou, T","venue":null,"work_id":"98f2a409-e35a-494d-af45-01f8c099fd58","year":2019},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":94,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:03.795690Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:1a6abd3bf9d16f90eb3883fe8c6d0f48cbefe127914b248e36af75dca2695933","observation_id":"2279dd57-b781-4e74-9593-f556dfb1d6bb","resolution":{"observed_at":"2026-08-07T13:40:22.320517Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:22.098417Z","title":"Target-specific de novo peptide binder design with diffpepbuilder","venue":null,"work_id":"54286808-356a-4e51-9edc-fe8dd77fb12e","year":2024},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":95,"source":"arxiv_source","source_observed_at":"2026-08-07T13:36:03.904494Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:7754711a601865c9572a6558a11116b4ba7f418dd744b9f4555234898cce9239","observation_id":"9783d36d-e74b-4b65-bed3-a619318d5593","resolution":{"observed_at":"2026-08-07T13:40:22.168144Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:21.958577Z","title":"The pdbbind database: methodologies and updates","venue":null,"work_id":"b76406d5-0261-4c09-ace4-096b1ad51aee","year":2005},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":96,"source":"arxiv_source","source_observed_at":"2026-08-07T13:40:14.727159Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:46b5a432e3da389b44b79a146d09e4ef6dc3a057b222d03502bc5598edf45614","observation_id":"3e195099-dae6-4d1f-bdc4-9599ee1fbedd","resolution":{"observed_at":"2026-08-07T13:40:22.016497Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:21.807742Z","title":"Diffusion language models are versatile protein learners","venue":null,"work_id":"617c5d73-eb2c-4e3d-b892-af192b0d9238","year":2024},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":97,"source":"arxiv_source","source_observed_at":"2026-08-07T13:40:14.890141Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:157cc3c9a43e2c148b4f5b10297781e28acf50a60a011916340c00672df2bf39","observation_id":"728e2c23-184d-4622-89f1-598bd397e5bf","resolution":{"observed_at":"2026-08-07T13:40:21.881415Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:21.656450Z","title":"Dplm-2: A multimodal diffusion protein language model","venue":null,"work_id":"ef32d429-6d5d-4fe9-8190-bd47816eaee7","year":2025},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":98,"source":"arxiv_source","source_observed_at":"2026-08-07T13:40:14.939006Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:bc8af097d0f3d10af8cf1af27a7f063da655b1331cb89903c804c479b7f93f5f","observation_id":"ef75fbeb-51e3-4bb2-a334-a6bc31f1d104","resolution":{"observed_at":"2026-08-07T13:40:21.707799Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:15.006276Z","title":"L., Juergens, D., Bennett, N","venue":null,"work_id":null,"year":2023},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":99,"source":"arxiv_source","source_observed_at":"2026-08-07T13:40:15.006276Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:3c57411938a92270378469006c16c7e1e912a5dce87d30d625169e1be9a98f4d","observation_id":"ace33cca-030a-4534-bf4a-678855c088a5","resolution":{"observed_at":"2026-08-07T13:40:15.006276Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-07T13:40:21.477539Z","title":"Q-biolip: A comprehensive resource for quaternary structure-based protein--ligand interactions","venue":null,"work_id":"ee382c3c-b531-41ca-b42e-26bcda22c1f5","year":2024},"citing_paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling","version":1},"reference_index":100,"source":"arxiv_source","source_observed_at":"2026-08-07T13:40:15.052259Z"},"links":{"citing_paper":"/paper/2505.21452"},"observation_digest":"sha256:08581866447abba281faca93ac187a46c1e1356c27a80c908924b436069f6fc8","observation_id":"2ac81bcc-686a-4280-94c7-425f1416e31a","resolution":{"observed_at":"2026-08-07T13:40:21.537481Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"state":"measured"}}],"paper":{"arxiv_id":"2505.21452","last_updated":"2025-05-27T17:24:12Z","latest_version":1,"primary_category":"cs.LG","snapshot_observed_at":"2026-08-07T13:25:12.056833Z","submitted_at":"2025-05-27T17:24:12Z","title":"Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling"},"reference_resolution":{"displayed":100,"state_counts":{"malformed_identifier":0,"metadata_mismatch":1,"parse_uncertain":0,"unresolved":71,"verified_exact":1,"verified_fuzzy":27},"total_outbound_references":121},"refusal":"A citation records a reference. It does not transfer a finding from one paper to another.","schema":"pith.paper-citation-record.v1","standing_sources":[{"observed_at":"2026-08-08T06:32:00.761636+00:00","source":"crossref"},{"observed_at":"2026-08-08T06:31:55.24221+00:00","source":"retraction_watch"}],"thesis":"As of 8 August 2026, this Paper Citation Record lists 100 of 121 outbound references and 0 inbound Pith citation observations for arXiv:2505.21452."}