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arxiv: 1012.4759 · v1 · pith:LP3MQCNRnew · submitted 2010-12-21 · 💻 cs.IR · q-bio.OT

Chem2Bio2RDF: A Linked Open Data Portal for Chemical Biology

Bin Chen (1) , David J Wild (1) , Qian Zhu (1) , Ying Ding (2) , Xiao Dong (1) , Madhuvanthi Sankaranarayanan (1) , Huijun Wang (1) , Yuyin Sun (2) ((1) School of Informatics
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Computing Indiana University Bloomington IN USA (2) School of Library Information Science USA)
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classification 💻 cs.IR q-bio.OT
keywords portalbiologychem2bio2rdfchemicaldatalinkedmedlineopen
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The Chem2Bio2RDF portal is a Linked Open Data (LOD) portal for systems chemical biology aiming for facilitating drug discovery. It converts around 25 different datasets on genes, compounds, drugs, pathways, side effects, diseases, and MEDLINE/PubMed documents into RDF triples and links them to other LOD bubbles, such as Bio2RDF, LODD and DBPedia. The portal is based on D2R server and provides a SPARQL endpoint, but adds on few unique features like RDF faceted browser, user-friendly SPARQL query generator, MEDLINE/PubMed cross validation service, and Cytoscape visualization plugin. Three use cases demonstrate the functionality and usability of this portal.

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