{"schema":"https://pith.science/schemas/pith-integrity/v1.json","pith_number":"2606.12838","arxiv_id":"2606.12838","integrity":{"available":true,"endpoint":"/pith/2606.12838/integrity.json","summary":{"critical":0,"advisory":1,"informational":0,"by_detector":{"doi_compliance":{"total":1,"critical":0,"advisory":1,"informational":0}}},"clean":false,"detectors_run":[{"name":"doi_compliance","version":"1.0.0","status":"completed","ran_at":"2026-07-10T00:54:03.352025Z","findings_count":1}],"findings":[{"detector":"doi_compliance","finding_type":"recoverable_identifier","severity":"advisory","verdict_class":"incontrovertible","note":"DOI in the printed bibliography is fragmented by whitespace or line breaks. A longer candidate (10.1186/s13059-025-03840-y.19) was visible in the surrounding text but could not be confirmed against doi.org as printed.","detected_doi":"10.1186/s13059-025-03840-y.19","detected_arxiv_id":null,"ref_index":30,"audited_at":"2026-07-10T00:54:03.352025Z"}],"snapshot_sha256":"ba7776988337cfff8b2f098af9454e1a5578e399102a45ef1d18dcc0db4cf773"},"events":[{"event_id":11541,"event_type":"pith.integrity.v1","payload_sha256":"4819916b389387c510afe9b0d5cae337c4a9ef7c14f061836e8c6e18f44c69a2","signature_b64":"pjtZ2SSG2CeLpECBYEORT/2rN+IkQdXW/RrbWiQpOcR1KGKVtytDMzOf2OJfUTBoz6mOYcZuSfsxdIHO1vhaAg==","signing_key_id":"pith-v1-2026-05","created_at":"2026-07-10T00:58:29.687637+00:00","payload":{"note":"DOI in the printed bibliography is fragmented by whitespace or line breaks. A longer candidate (10.1186/s13059-025-03840-y.19) was visible in the surrounding text but could not be confirmed against doi.org as printed.","snippet":"Eli Kernfeld, Yanyu Yang, Joshua S. Weinstock, Alexander Battle, and Patrick Cahan. A comparison of computational methods for expression forecasting.Genome Biology, 26:388, 2025. doi:10.1186/s13059- 025-03840-y. 19 Appendix A Training Detai","arxiv_id":"2606.12838","detector":"doi_compliance","evidence":{"ref_index":30,"verdict_class":"incontrovertible","resolved_title":null,"printed_excerpt":"Eli Kernfeld, Yanyu Yang, Joshua S. Weinstock, Alexander Battle, and Patrick Cahan. A comparison of computational methods for expression forecasting.Genome Biology, 26:388, 2025. doi:10.1186/s13059- 025-03840-y. 19 Appendix A Training Detai","reconstructed_doi":"10.1186/s13059-025-03840-y.19"},"severity":"advisory","ref_index":30,"audited_at":"2026-07-10T00:54:03.352025Z","event_type":"pith.integrity.v1","detected_doi":"10.1186/s13059-025-03840-y.19","detector_url":"https://pith.science/pith-integrity-protocol#doi_compliance","external_url":null,"finding_type":"recoverable_identifier","evidence_hash":"08599ec41556450333b35c439fb131152e320ca5b0502298fb788d481b5c6e6d","paper_version":1,"verdict_class":"incontrovertible","resolved_title":null,"detector_version":"1.0.0","detected_arxiv_id":null}}],"endpoint_self":"/pith/2606.12838/integrity.json","protocol_url":"https://pith.science/pith-integrity-protocol"}