{"schema":"https://pith.science/schemas/pith-integrity/v1.json","pith_number":"2608.07078","arxiv_id":"2608.07078","integrity":{"available":true,"endpoint":"/pith/2608.07078/integrity.json","summary":{"critical":1,"advisory":1,"informational":0,"by_detector":{"doi_compliance":{"total":2,"critical":1,"advisory":1,"informational":0}}},"clean":false,"detectors_run":[{"name":"doi_title_agreement","version":"1.0.0","status":"completed","ran_at":"2026-08-17T19:08:31.981890Z","findings_count":0},{"name":"doi_compliance","version":"1.1.0","status":"completed","ran_at":"2026-08-17T17:49:06.514619Z","findings_count":2},{"name":"ai_meta_artifact","version":"1.0.0","status":"skipped","ran_at":"2026-08-17T04:08:41.230747Z","findings_count":0},{"name":"claim_evidence","version":"1.0.0","status":"completed","ran_at":"2026-08-13T13:28:13.432280Z","findings_count":0},{"name":"citation_quote_validity","version":"0.1.0","status":"skipped","ran_at":"2026-08-10T11:08:35.164749Z","findings_count":0},{"name":"cited_work_retraction","version":"1.0.0","status":"completed","ran_at":"2026-08-10T08:08:08.176576Z","findings_count":0}],"findings":[{"detector":"doi_compliance","finding_type":"unresolvable_identifier","severity":"critical","verdict_class":"cross_source","note":"Identifier '10.1002/1097-0134(20000815)40:' is syntactically valid but the DOI registry (doi.org) returned 404, and Crossref / OpenAlex / internal corpus also have no record. The cited work could not be located through any authoritative source.","detected_doi":"10.1002/1097-0134(20000815)40:","detected_arxiv_id":null,"ref_index":31,"audited_at":"2026-08-10T15:28:07.212127Z"},{"detector":"doi_compliance","finding_type":"recoverable_identifier","severity":"advisory","verdict_class":"incontrovertible","note":"DOI is split by whitespace or line breaks in the printed bibliography. Reconstructed DOI 10.1093/nar/gkn216 resolves to 'The RosettaDock server for local protein-protein docking'. A reader following the printed text alone cannot reach it.","detected_doi":"10.1093/nar/gkn216","detected_arxiv_id":null,"ref_index":25,"audited_at":"2026-08-10T15:28:07.212127Z"}],"snapshot_sha256":"6102a6811958d768ffb8e44d7ecd32c012d5ad97bebfb69659f64cc12d1a9954"},"events":[{"event_id":18834,"event_type":"pith.integrity.v1","payload_sha256":"5dc4f7cfb8f9a349d0b2ae280b244bba9a91ab7764b3924520300d4378290cde","signature_b64":"B66GdqUjwlYvIk4gR4Lq0mXG2h0iMognjWIKULM1reEzNLxmF+gEEkb4Nt6cdG7UtTuLVQ+jS4/9PdrEdojNDw==","signing_key_id":"pith-v1-2026-05","created_at":"2026-08-10T15:28:29.217628+00:00","payload":{"note":"Identifier '10.1002/1097-0134(20000815)40:' is syntactically valid but the DOI registry (doi.org) returned 404, and Crossref / OpenAlex / internal corpus also have no record. The cited work could not be located through any authoritative source.","snippet":"P. Doruker, A. R. Atilgan, and I. Bahar, “Dynamics of proteins predicted by molecular dynamics simulations and analytical approaches: Application toα-amylase inhibitor,”Proteins: Structure, Function, and Bioinformatics, vol. 40, no. 3, pp. ","arxiv_id":"2608.07078","detector":"doi_compliance","evidence":{"doi":"10.1002/1097-0134(20000815)40:","arxiv_id":null,"ref_index":31,"raw_excerpt":"P. Doruker, A. R. Atilgan, and I. Bahar, “Dynamics of proteins predicted by molecular dynamics simulations and analytical approaches: Application toα-amylase inhibitor,”Proteins: Structure, Function, and Bioinformatics, vol. 40, no. 3, pp. 512–524, 2000. [Online]. Available: https://doi.org/10.1002/1097-0134(20000815)40: 3⟨512::AID-PROT180⟩3.0.CO;2-M","parse_status":"well_formed","verdict_class":"cross_source","checked_sources":["crossref_by_doi","openalex_by_doi","doi_org_head"],"resolution_status":"hard_miss"},"severity":"critical","ref_index":31,"audited_at":"2026-08-10T15:28:07.212127Z","event_type":"pith.integrity.v1","detected_doi":"10.1002/1097-0134(20000815)40:","detector_url":"https://pith.science/pith-integrity-protocol#doi_compliance","external_url":null,"finding_type":"unresolvable_identifier","evidence_hash":"72161c1784576b103fb528542d8b40f7c1210a8b45d577c57e7cdd77af3c6c6c","paper_version":1,"verdict_class":"cross_source","resolved_title":null,"detector_version":"1.1.0","detected_arxiv_id":null}},{"event_id":18833,"event_type":"pith.integrity.v1","payload_sha256":"a6ce9c9a90c0b136cc04387c855b660a58bc22cc2ef23938be6aeffd3067989f","signature_b64":"z2WixxNTWVaunvkIe00UMUZfF+Vmtg0oTm/Vg1xG0vSTUuf39JGTGDf9PxiveQCxkYZJA2/dHxAthAHXdSIDBg==","signing_key_id":"pith-v1-2026-05","created_at":"2026-08-10T15:28:29.207275+00:00","payload":{"note":"DOI is split by whitespace or line breaks in the printed bibliography. Reconstructed DOI 10.1093/nar/gkn216 resolves to 'The RosettaDock server for local protein-protein docking'. A reader following the printed text alone cannot reach it.","snippet":"S. Lyskov and J. J. Gray, “The rosettadock server for local protein– protein docking,”Nucleic acids research, vol. 36, no. suppl 2, pp. W233–W238, 2008. [Online]. Available: https://doi.org/10.1093/nar/ gkn216","arxiv_id":"2608.07078","detector":"doi_compliance","evidence":{"ref_index":25,"verdict_class":"incontrovertible","resolved_title":"The RosettaDock server for local protein-protein docking","printed_excerpt":"10.1093/nar/","reconstructed_doi":"10.1093/nar/gkn216"},"severity":"advisory","ref_index":25,"audited_at":"2026-08-10T15:28:07.212127Z","event_type":"pith.integrity.v1","detected_doi":"10.1093/nar/gkn216","detector_url":"https://pith.science/pith-integrity-protocol#doi_compliance","external_url":null,"finding_type":"recoverable_identifier","evidence_hash":"84af7213631809bb611f411750588f9e7588af4c87ff406af8a1468a84ae4594","paper_version":1,"verdict_class":"incontrovertible","resolved_title":"The RosettaDock server for local protein-protein docking","detector_version":"1.1.0","detected_arxiv_id":null}}],"endpoint_self":"/pith/2608.07078/integrity.json","protocol_url":"https://pith.science/pith-integrity-protocol"}