{"bundle_type":"pith_open_graph_bundle","bundle_version":"1.0","pith_number":"pith:2024:3KSZSARAHLW2LWFCZ5RDL6GO6Y","short_pith_number":"pith:3KSZSARA","canonical_record":{"source":{"id":"2411.06785","kind":"arxiv","version":2},"metadata":{"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"cs.LG","submitted_at":"2024-11-11T08:24:59Z","cross_cats_sorted":["q-bio.GN"],"title_canon_sha256":"65ebf8d3d19afe2f9325d3117361ae927450de65b82606dcd94966f4a4d25e0c","abstract_canon_sha256":"aadf167987420974e72cdc8fa5c353e586338f468c45e7751c4da58d9a8c5234"},"schema_version":"1.0"},"canonical_sha256":"daa59902203aeda5d8a2cf6235f8cef60494097098b95fda131d55aa83686a7a","source":{"kind":"arxiv","id":"2411.06785","version":2},"source_aliases":[{"alias_kind":"arxiv","alias_value":"2411.06785","created_at":"2026-07-05T09:36:16Z"},{"alias_kind":"arxiv_version","alias_value":"2411.06785v2","created_at":"2026-07-05T09:36:16Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.2411.06785","created_at":"2026-07-05T09:36:16Z"},{"alias_kind":"pith_short_12","alias_value":"3KSZSARAHLW2","created_at":"2026-07-05T09:36:16Z"},{"alias_kind":"pith_short_16","alias_value":"3KSZSARAHLW2LWFC","created_at":"2026-07-05T09:36:16Z"},{"alias_kind":"pith_short_8","alias_value":"3KSZSARA","created_at":"2026-07-05T09:36:16Z"}],"events":[{"event_type":"record_created","subject_pith_number":"pith:2024:3KSZSARAHLW2LWFCZ5RDL6GO6Y","target":"record","payload":{"canonical_record":{"source":{"id":"2411.06785","kind":"arxiv","version":2},"metadata":{"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"cs.LG","submitted_at":"2024-11-11T08:24:59Z","cross_cats_sorted":["q-bio.GN"],"title_canon_sha256":"65ebf8d3d19afe2f9325d3117361ae927450de65b82606dcd94966f4a4d25e0c","abstract_canon_sha256":"aadf167987420974e72cdc8fa5c353e586338f468c45e7751c4da58d9a8c5234"},"schema_version":"1.0"},"canonical_sha256":"daa59902203aeda5d8a2cf6235f8cef60494097098b95fda131d55aa83686a7a","receipt":{"kind":"pith_receipt","key_id":"pith-v1-2026-05","algorithm":"ed25519","signed_at":"2026-07-05T09:36:16.191700Z","signature_b64":"36XiWyUoF4+cxY6FeGqUQf+A33Cig0xkxsx1qyZCvowCd8toDMtKIQNClHx/+S7IyD0ozEb4HZ0AZPfLaiBNCg==","signed_message":"canonical_sha256_bytes","builder_version":"pith-number-builder-2026-05-17-v1","receipt_version":"0.3","canonical_sha256":"daa59902203aeda5d8a2cf6235f8cef60494097098b95fda131d55aa83686a7a","last_reissued_at":"2026-07-05T09:36:16.191199Z","signature_status":"signed_v1","first_computed_at":"2026-07-05T09:36:16.191199Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"source_kind":"arxiv","source_id":"2411.06785","source_version":2,"attestation_state":"computed"},"signer":{"signer_id":"pith.science","signer_type":"pith_registry","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"created_at":"2026-07-05T09:36:16Z","supersedes":[],"prev_event":null,"signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"ZHNXlNh+hKgZ5UWSqquSU85ygI0qUp+b0z/Rze8N3KmhT6zpjoFh40jrxJ68vrzNq8DtP18w0nWibj+dRxs0BA==","signed_message":"open_graph_event_sha256_bytes","signed_at":"2026-08-19T00:42:42.595841Z"},"content_sha256":"68aaf62871a95f68dba81c18b02e0ea2942440842ee8bd28c634695d1f86f3af","schema_version":"1.0","event_id":"sha256:68aaf62871a95f68dba81c18b02e0ea2942440842ee8bd28c634695d1f86f3af"},{"event_type":"graph_snapshot","subject_pith_number":"pith:2024:3KSZSARAHLW2LWFCZ5RDL6GO6Y","target":"graph","payload":{"graph_snapshot":{"paper":{"title":"White-Box Diffusion Transformer for single-cell RNA-seq generation","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","headline":"","cross_cats":["q-bio.GN"],"primary_cat":"cs.LG","authors_text":"Ding Liu, Shengze Dong, Zhuorui Cui","submitted_at":"2024-11-11T08:24:59Z","abstract_excerpt":"As a powerful tool for characterizing cellular subpopulations and cellular heterogeneity, single cell RNA sequencing (scRNA-seq) technology offers advantages of high throughput and multidimensional analysis. However, the process of data acquisition is often constrained by high cost and limited sample availability. To overcome these limitations, we propose a hybrid model based on Diffusion model and White-Box transformer that aims to generate synthetic and biologically plausible scRNA-seq data. Diffusion model progressively introduce noise into the data and then recover the original data throug"},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"2411.06785","kind":"arxiv","version":2},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"integrity":{"clean":true,"summary":{"advisory":0,"critical":0,"by_detector":{},"informational":0},"endpoint":"/pith/2411.06785/integrity.json","findings":[],"available":true,"detectors_run":[],"snapshot_sha256":"c28c3603d3b5d939e8dc4c7e95fa8dfce3d595e45f758748cecf8e644a296938"},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"},"verdict_id":null},"signer":{"signer_id":"pith.science","signer_type":"pith_registry","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"created_at":"2026-07-05T09:36:16Z","supersedes":[],"prev_event":null,"signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"U0z7oGvB0CYbyFotliDbtp0kuEIvnarOAb6L8W+SPhrMeR1aDuwGF6fXfKVQq4ZbID429QgMXKhiJejltXg4Aw==","signed_message":"open_graph_event_sha256_bytes","signed_at":"2026-08-19T00:42:42.596217Z"},"content_sha256":"9c788fcd934ee1e8d4b1005578a1cf0e8d80f39eabda853faf048868868940bc","schema_version":"1.0","event_id":"sha256:9c788fcd934ee1e8d4b1005578a1cf0e8d80f39eabda853faf048868868940bc"}],"timestamp_proofs":[],"mirror_hints":[{"mirror_type":"https","name":"Pith Resolver","base_url":"https://pith.science","bundle_url":"https://pith.science/pith/3KSZSARAHLW2LWFCZ5RDL6GO6Y/bundle.json","state_url":"https://pith.science/pith/3KSZSARAHLW2LWFCZ5RDL6GO6Y/state.json","well_known_bundle_url":"https://pith.science/.well-known/pith/3KSZSARAHLW2LWFCZ5RDL6GO6Y/bundle.json","status":"primary"}],"public_keys":[{"key_id":"pith-v1-2026-05","algorithm":"ed25519","format":"raw","public_key_b64":"stVStoiQhXFxp4s2pdzPNoqVNBMojDU/fJ2db5S3CbM=","public_key_hex":"b2d552b68890857171a78b36a5dccf368a953413288c353f7c9d9d6f94b709b3","fingerprint_sha256_b32_first128bits":"RVFV5Z2OI2J3ZUO7ERDEBCYNKS","fingerprint_sha256_hex":"8d4b5ee74e4693bcd1df2446408b0d54","rotates_at":null,"url":"https://pith.science/pith-signing-key.json","notes":"Pith uses this Ed25519 key to sign canonical record SHA-256 digests. Verify with: ed25519_verify(public_key, message=canonical_sha256_bytes, signature=base64decode(signature_b64))."}],"merge_version":"pith-open-graph-merge-v1","built_at":"2026-08-19T00:42:42Z","links":{"resolver":"https://pith.science/pith/3KSZSARAHLW2LWFCZ5RDL6GO6Y","bundle":"https://pith.science/pith/3KSZSARAHLW2LWFCZ5RDL6GO6Y/bundle.json","state":"https://pith.science/pith/3KSZSARAHLW2LWFCZ5RDL6GO6Y/state.json","well_known_bundle":"https://pith.science/.well-known/pith/3KSZSARAHLW2LWFCZ5RDL6GO6Y/bundle.json"},"state":{"state_type":"pith_open_graph_state","state_version":"1.0","pith_number":"pith:2024:3KSZSARAHLW2LWFCZ5RDL6GO6Y","merge_version":"pith-open-graph-merge-v1","event_count":2,"valid_event_count":2,"invalid_event_count":0,"equivocation_count":0,"current":{"canonical_record":{"metadata":{"abstract_canon_sha256":"aadf167987420974e72cdc8fa5c353e586338f468c45e7751c4da58d9a8c5234","cross_cats_sorted":["q-bio.GN"],"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"cs.LG","submitted_at":"2024-11-11T08:24:59Z","title_canon_sha256":"65ebf8d3d19afe2f9325d3117361ae927450de65b82606dcd94966f4a4d25e0c"},"schema_version":"1.0","source":{"id":"2411.06785","kind":"arxiv","version":2}},"source_aliases":[{"alias_kind":"arxiv","alias_value":"2411.06785","created_at":"2026-07-05T09:36:16Z"},{"alias_kind":"arxiv_version","alias_value":"2411.06785v2","created_at":"2026-07-05T09:36:16Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.2411.06785","created_at":"2026-07-05T09:36:16Z"},{"alias_kind":"pith_short_12","alias_value":"3KSZSARAHLW2","created_at":"2026-07-05T09:36:16Z"},{"alias_kind":"pith_short_16","alias_value":"3KSZSARAHLW2LWFC","created_at":"2026-07-05T09:36:16Z"},{"alias_kind":"pith_short_8","alias_value":"3KSZSARA","created_at":"2026-07-05T09:36:16Z"}],"graph_snapshots":[{"event_id":"sha256:9c788fcd934ee1e8d4b1005578a1cf0e8d80f39eabda853faf048868868940bc","target":"graph","created_at":"2026-07-05T09:36:16Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"graph_snapshot":{"author_claims":{"count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","strong_count":0},"builder_version":"pith-number-builder-2026-05-17-v1","claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"integrity":{"available":true,"clean":true,"detectors_run":[],"endpoint":"/pith/2411.06785/integrity.json","findings":[],"snapshot_sha256":"c28c3603d3b5d939e8dc4c7e95fa8dfce3d595e45f758748cecf8e644a296938","summary":{"advisory":0,"by_detector":{},"critical":0,"informational":0}},"paper":{"abstract_excerpt":"As a powerful tool for characterizing cellular subpopulations and cellular heterogeneity, single cell RNA sequencing (scRNA-seq) technology offers advantages of high throughput and multidimensional analysis. However, the process of data acquisition is often constrained by high cost and limited sample availability. To overcome these limitations, we propose a hybrid model based on Diffusion model and White-Box transformer that aims to generate synthetic and biologically plausible scRNA-seq data. Diffusion model progressively introduce noise into the data and then recover the original data throug","authors_text":"Ding Liu, Shengze Dong, Zhuorui Cui","cross_cats":["q-bio.GN"],"headline":"","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"cs.LG","submitted_at":"2024-11-11T08:24:59Z","title":"White-Box Diffusion Transformer for single-cell RNA-seq generation"},"references":{"count":0,"internal_anchors":0,"resolved_work":0,"sample":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"2411.06785","kind":"arxiv","version":2},"verdict":{"created_at":null,"id":null,"model_set":{},"one_line_summary":"","pipeline_version":null,"pith_extraction_headline":"","strongest_claim":"","weakest_assumption":""}},"verdict_id":null}}],"author_attestations":[],"timestamp_anchors":[],"storage_attestations":[],"citation_signatures":[],"replication_records":[],"corrections":[],"mirror_hints":[],"record_created":{"event_id":"sha256:68aaf62871a95f68dba81c18b02e0ea2942440842ee8bd28c634695d1f86f3af","target":"record","created_at":"2026-07-05T09:36:16Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"attestation_state":"computed","canonical_record":{"metadata":{"abstract_canon_sha256":"aadf167987420974e72cdc8fa5c353e586338f468c45e7751c4da58d9a8c5234","cross_cats_sorted":["q-bio.GN"],"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"cs.LG","submitted_at":"2024-11-11T08:24:59Z","title_canon_sha256":"65ebf8d3d19afe2f9325d3117361ae927450de65b82606dcd94966f4a4d25e0c"},"schema_version":"1.0","source":{"id":"2411.06785","kind":"arxiv","version":2}},"canonical_sha256":"daa59902203aeda5d8a2cf6235f8cef60494097098b95fda131d55aa83686a7a","receipt":{"algorithm":"ed25519","builder_version":"pith-number-builder-2026-05-17-v1","canonical_sha256":"daa59902203aeda5d8a2cf6235f8cef60494097098b95fda131d55aa83686a7a","first_computed_at":"2026-07-05T09:36:16.191199Z","key_id":"pith-v1-2026-05","kind":"pith_receipt","last_reissued_at":"2026-07-05T09:36:16.191199Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","receipt_version":"0.3","signature_b64":"36XiWyUoF4+cxY6FeGqUQf+A33Cig0xkxsx1qyZCvowCd8toDMtKIQNClHx/+S7IyD0ozEb4HZ0AZPfLaiBNCg==","signature_status":"signed_v1","signed_at":"2026-07-05T09:36:16.191700Z","signed_message":"canonical_sha256_bytes"},"source_id":"2411.06785","source_kind":"arxiv","source_version":2}}},"equivocations":[],"invalid_events":[],"applied_event_ids":["sha256:68aaf62871a95f68dba81c18b02e0ea2942440842ee8bd28c634695d1f86f3af","sha256:9c788fcd934ee1e8d4b1005578a1cf0e8d80f39eabda853faf048868868940bc"],"state_sha256":"11d0d247c47438f1e5038760a485a1972a5ab508a6568911819f088d151c09c8"},"bundle_signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"d16+6KN0u3xZJncQFobrtDzccYoV3e+Ze+jojw0oyIfM5aVWy17KYezFkX/FWHr3l/YmMzifwI5spwAdEXxbCw==","signed_message":"bundle_sha256_bytes","signed_at":"2026-08-19T00:42:42.598982Z","bundle_sha256":"3667d67033fd9677922d01bf4d5bfaf5223b91655e4a2a4370692c300c190a8f"}}