{"bundle_type":"pith_open_graph_bundle","bundle_version":"1.0","pith_number":"pith:2013:47ZRGRXARCBH3HTNPPJYKF6YWM","short_pith_number":"pith:47ZRGRXA","canonical_record":{"source":{"id":"1311.2452","kind":"arxiv","version":1},"metadata":{"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.MN","submitted_at":"2013-11-11T14:34:44Z","cross_cats_sorted":["q-bio.QM"],"title_canon_sha256":"ff1bc68a77fc57fec28487e3904585a0273574d55eb660928684fd35bd3710f5","abstract_canon_sha256":"47e15efc6f6af83b16333c9c137c4e9cc290c55447d754de32bb5a8f7d88e435"},"schema_version":"1.0"},"canonical_sha256":"e7f31346e088827d9e6d7bd38517d8b32bbbc939bc7c313bb7e944ad8a1f3b8e","source":{"kind":"arxiv","id":"1311.2452","version":1},"source_aliases":[{"alias_kind":"arxiv","alias_value":"1311.2452","created_at":"2026-05-18T03:07:32Z"},{"alias_kind":"arxiv_version","alias_value":"1311.2452v1","created_at":"2026-05-18T03:07:32Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.1311.2452","created_at":"2026-05-18T03:07:32Z"},{"alias_kind":"pith_short_12","alias_value":"47ZRGRXARCBH","created_at":"2026-05-18T12:27:32Z"},{"alias_kind":"pith_short_16","alias_value":"47ZRGRXARCBH3HTN","created_at":"2026-05-18T12:27:32Z"},{"alias_kind":"pith_short_8","alias_value":"47ZRGRXA","created_at":"2026-05-18T12:27:32Z"}],"events":[{"event_type":"record_created","subject_pith_number":"pith:2013:47ZRGRXARCBH3HTNPPJYKF6YWM","target":"record","payload":{"canonical_record":{"source":{"id":"1311.2452","kind":"arxiv","version":1},"metadata":{"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.MN","submitted_at":"2013-11-11T14:34:44Z","cross_cats_sorted":["q-bio.QM"],"title_canon_sha256":"ff1bc68a77fc57fec28487e3904585a0273574d55eb660928684fd35bd3710f5","abstract_canon_sha256":"47e15efc6f6af83b16333c9c137c4e9cc290c55447d754de32bb5a8f7d88e435"},"schema_version":"1.0"},"canonical_sha256":"e7f31346e088827d9e6d7bd38517d8b32bbbc939bc7c313bb7e944ad8a1f3b8e","receipt":{"kind":"pith_receipt","key_id":"pith-v1-2026-05","algorithm":"ed25519","signed_at":"2026-05-18T03:07:32.598061Z","signature_b64":"fUy+BKY23YEVtBLvun14FZZgeO/w1jpVRq2iGp0nEFgwzFsKAZJtq+8IF2JZ/y5bRq8eY1hj9mxFM5Osa6h6Aw==","signed_message":"canonical_sha256_bytes","builder_version":"pith-number-builder-2026-05-17-v1","receipt_version":"0.3","canonical_sha256":"e7f31346e088827d9e6d7bd38517d8b32bbbc939bc7c313bb7e944ad8a1f3b8e","last_reissued_at":"2026-05-18T03:07:32.597563Z","signature_status":"signed_v1","first_computed_at":"2026-05-18T03:07:32.597563Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"source_kind":"arxiv","source_id":"1311.2452","source_version":1,"attestation_state":"computed"},"signer":{"signer_id":"pith.science","signer_type":"pith_registry","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"created_at":"2026-05-18T03:07:32Z","supersedes":[],"prev_event":null,"signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"FFRN3XUgNFqY736PvkOTUDkzdtHepmu2Gpu0f8qTyQIEsdr8cpto5DuVp2rzArxTwwI5x5UQaGneDTMpCIgVDQ==","signed_message":"open_graph_event_sha256_bytes","signed_at":"2026-05-22T17:19:24.985991Z"},"content_sha256":"35c1e10bb378502c756baae0bfa6e835d24fe2e0609524dbba2f11f2849fe80e","schema_version":"1.0","event_id":"sha256:35c1e10bb378502c756baae0bfa6e835d24fe2e0609524dbba2f11f2849fe80e"},{"event_type":"graph_snapshot","subject_pith_number":"pith:2013:47ZRGRXARCBH3HTNPPJYKF6YWM","target":"graph","payload":{"graph_snapshot":{"paper":{"title":"MAGNA: Maximizing Accuracy in Global Network Alignment","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","headline":"","cross_cats":["q-bio.QM"],"primary_cat":"q-bio.MN","authors_text":"Tijana Milenkovi\\'c, Vikram Saraph","submitted_at":"2013-11-11T14:34:44Z","abstract_excerpt":"Biological network alignment aims to identify similar regions between networks of different species. Existing methods compute node \"similarities\" to rapidly identify from possible alignments the \"high-scoring\" alignments with respect to the overall node similarity. However, the accuracy of the alignments is then evaluated with some other measure that is different than the node similarity used to construct the alignments. Typically, one measures the amount of conserved edges. Thus, the existing methods align similar nodes between networks hoping to conserve many edges (after the alignment is co"},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"1311.2452","kind":"arxiv","version":1},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"},"verdict_id":null},"signer":{"signer_id":"pith.science","signer_type":"pith_registry","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"created_at":"2026-05-18T03:07:32Z","supersedes":[],"prev_event":null,"signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"URtDaCHE7r37G1SrwWlRGa0cfe2DB9IF+3HdCHnUB5oHQ/TGXmCCRFu+mY9JDwlemYVPCezMPRtZVGU/00piDQ==","signed_message":"open_graph_event_sha256_bytes","signed_at":"2026-05-22T17:19:24.986385Z"},"content_sha256":"31b42d2a7e5eed757e37943f7024616f76203cb043b50de293148f4bc138adfa","schema_version":"1.0","event_id":"sha256:31b42d2a7e5eed757e37943f7024616f76203cb043b50de293148f4bc138adfa"}],"timestamp_proofs":[],"mirror_hints":[{"mirror_type":"https","name":"Pith Resolver","base_url":"https://pith.science","bundle_url":"https://pith.science/pith/47ZRGRXARCBH3HTNPPJYKF6YWM/bundle.json","state_url":"https://pith.science/pith/47ZRGRXARCBH3HTNPPJYKF6YWM/state.json","well_known_bundle_url":"https://pith.science/.well-known/pith/47ZRGRXARCBH3HTNPPJYKF6YWM/bundle.json","status":"primary"}],"public_keys":[{"key_id":"pith-v1-2026-05","algorithm":"ed25519","format":"raw","public_key_b64":"stVStoiQhXFxp4s2pdzPNoqVNBMojDU/fJ2db5S3CbM=","public_key_hex":"b2d552b68890857171a78b36a5dccf368a953413288c353f7c9d9d6f94b709b3","fingerprint_sha256_b32_first128bits":"RVFV5Z2OI2J3ZUO7ERDEBCYNKS","fingerprint_sha256_hex":"8d4b5ee74e4693bcd1df2446408b0d54","rotates_at":null,"url":"https://pith.science/pith-signing-key.json","notes":"Pith uses this Ed25519 key to sign canonical record SHA-256 digests. Verify with: ed25519_verify(public_key, message=canonical_sha256_bytes, signature=base64decode(signature_b64))."}],"merge_version":"pith-open-graph-merge-v1","built_at":"2026-05-22T17:19:24Z","links":{"resolver":"https://pith.science/pith/47ZRGRXARCBH3HTNPPJYKF6YWM","bundle":"https://pith.science/pith/47ZRGRXARCBH3HTNPPJYKF6YWM/bundle.json","state":"https://pith.science/pith/47ZRGRXARCBH3HTNPPJYKF6YWM/state.json","well_known_bundle":"https://pith.science/.well-known/pith/47ZRGRXARCBH3HTNPPJYKF6YWM/bundle.json"},"state":{"state_type":"pith_open_graph_state","state_version":"1.0","pith_number":"pith:2013:47ZRGRXARCBH3HTNPPJYKF6YWM","merge_version":"pith-open-graph-merge-v1","event_count":2,"valid_event_count":2,"invalid_event_count":0,"equivocation_count":0,"current":{"canonical_record":{"metadata":{"abstract_canon_sha256":"47e15efc6f6af83b16333c9c137c4e9cc290c55447d754de32bb5a8f7d88e435","cross_cats_sorted":["q-bio.QM"],"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.MN","submitted_at":"2013-11-11T14:34:44Z","title_canon_sha256":"ff1bc68a77fc57fec28487e3904585a0273574d55eb660928684fd35bd3710f5"},"schema_version":"1.0","source":{"id":"1311.2452","kind":"arxiv","version":1}},"source_aliases":[{"alias_kind":"arxiv","alias_value":"1311.2452","created_at":"2026-05-18T03:07:32Z"},{"alias_kind":"arxiv_version","alias_value":"1311.2452v1","created_at":"2026-05-18T03:07:32Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.1311.2452","created_at":"2026-05-18T03:07:32Z"},{"alias_kind":"pith_short_12","alias_value":"47ZRGRXARCBH","created_at":"2026-05-18T12:27:32Z"},{"alias_kind":"pith_short_16","alias_value":"47ZRGRXARCBH3HTN","created_at":"2026-05-18T12:27:32Z"},{"alias_kind":"pith_short_8","alias_value":"47ZRGRXA","created_at":"2026-05-18T12:27:32Z"}],"graph_snapshots":[{"event_id":"sha256:31b42d2a7e5eed757e37943f7024616f76203cb043b50de293148f4bc138adfa","target":"graph","created_at":"2026-05-18T03:07:32Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"graph_snapshot":{"author_claims":{"count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","strong_count":0},"builder_version":"pith-number-builder-2026-05-17-v1","claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"paper":{"abstract_excerpt":"Biological network alignment aims to identify similar regions between networks of different species. Existing methods compute node \"similarities\" to rapidly identify from possible alignments the \"high-scoring\" alignments with respect to the overall node similarity. However, the accuracy of the alignments is then evaluated with some other measure that is different than the node similarity used to construct the alignments. Typically, one measures the amount of conserved edges. Thus, the existing methods align similar nodes between networks hoping to conserve many edges (after the alignment is co","authors_text":"Tijana Milenkovi\\'c, Vikram Saraph","cross_cats":["q-bio.QM"],"headline":"","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.MN","submitted_at":"2013-11-11T14:34:44Z","title":"MAGNA: Maximizing Accuracy in Global Network Alignment"},"references":{"count":0,"internal_anchors":0,"resolved_work":0,"sample":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"1311.2452","kind":"arxiv","version":1},"verdict":{"created_at":null,"id":null,"model_set":{},"one_line_summary":"","pipeline_version":null,"pith_extraction_headline":"","strongest_claim":"","weakest_assumption":""}},"verdict_id":null}}],"author_attestations":[],"timestamp_anchors":[],"storage_attestations":[],"citation_signatures":[],"replication_records":[],"corrections":[],"mirror_hints":[],"record_created":{"event_id":"sha256:35c1e10bb378502c756baae0bfa6e835d24fe2e0609524dbba2f11f2849fe80e","target":"record","created_at":"2026-05-18T03:07:32Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"attestation_state":"computed","canonical_record":{"metadata":{"abstract_canon_sha256":"47e15efc6f6af83b16333c9c137c4e9cc290c55447d754de32bb5a8f7d88e435","cross_cats_sorted":["q-bio.QM"],"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.MN","submitted_at":"2013-11-11T14:34:44Z","title_canon_sha256":"ff1bc68a77fc57fec28487e3904585a0273574d55eb660928684fd35bd3710f5"},"schema_version":"1.0","source":{"id":"1311.2452","kind":"arxiv","version":1}},"canonical_sha256":"e7f31346e088827d9e6d7bd38517d8b32bbbc939bc7c313bb7e944ad8a1f3b8e","receipt":{"algorithm":"ed25519","builder_version":"pith-number-builder-2026-05-17-v1","canonical_sha256":"e7f31346e088827d9e6d7bd38517d8b32bbbc939bc7c313bb7e944ad8a1f3b8e","first_computed_at":"2026-05-18T03:07:32.597563Z","key_id":"pith-v1-2026-05","kind":"pith_receipt","last_reissued_at":"2026-05-18T03:07:32.597563Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","receipt_version":"0.3","signature_b64":"fUy+BKY23YEVtBLvun14FZZgeO/w1jpVRq2iGp0nEFgwzFsKAZJtq+8IF2JZ/y5bRq8eY1hj9mxFM5Osa6h6Aw==","signature_status":"signed_v1","signed_at":"2026-05-18T03:07:32.598061Z","signed_message":"canonical_sha256_bytes"},"source_id":"1311.2452","source_kind":"arxiv","source_version":1}}},"equivocations":[],"invalid_events":[],"applied_event_ids":["sha256:35c1e10bb378502c756baae0bfa6e835d24fe2e0609524dbba2f11f2849fe80e","sha256:31b42d2a7e5eed757e37943f7024616f76203cb043b50de293148f4bc138adfa"],"state_sha256":"59bc3016aee1c8ad2a071a0fb82aa1a85409cbb66691204b3d12e3f3d67ee31e"},"bundle_signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"C+6K/9M+OcsS1CO3kkRFpLE8pPBBv+pSKCzXrQkepXkNqo8FCYA5LAlhiOB/4nMge6OVhHuucF9tuqmJ4R+2Dw==","signed_message":"bundle_sha256_bytes","signed_at":"2026-05-22T17:19:24.989150Z","bundle_sha256":"d2fbd8d98735b3d71edca290363d38e5d7d546e5e1050add65912a608db9427f"}}