{"bundle_type":"pith_open_graph_bundle","bundle_version":"1.0","pith_number":"pith:2020:5PN6FGGJSEIV3E3BYSGM3DZY5H","short_pith_number":"pith:5PN6FGGJ","canonical_record":{"source":{"id":"2009.07692","kind":"arxiv","version":1},"metadata":{"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"cs.AR","submitted_at":"2020-09-16T13:54:33Z","cross_cats_sorted":["q-bio.GN"],"title_canon_sha256":"0eac702c86422fc4d93f72ee97daf57d28d2515cf1513ca36c6e905ab6fc6210","abstract_canon_sha256":"d5befb0494efef4eafcc7a61cdab357c66741f968723ccc8bdcec6190e9c08f3"},"schema_version":"1.0"},"canonical_sha256":"ebdbe298c991115d9361c48ccd8f38e9d4fc9be92e469946a6350acee95bd53c","source":{"kind":"arxiv","id":"2009.07692","version":1},"source_aliases":[{"alias_kind":"arxiv","alias_value":"2009.07692","created_at":"2026-07-05T01:35:55Z"},{"alias_kind":"arxiv_version","alias_value":"2009.07692v1","created_at":"2026-07-05T01:35:55Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.2009.07692","created_at":"2026-07-05T01:35:55Z"},{"alias_kind":"pith_short_12","alias_value":"5PN6FGGJSEIV","created_at":"2026-07-05T01:35:55Z"},{"alias_kind":"pith_short_16","alias_value":"5PN6FGGJSEIV3E3B","created_at":"2026-07-05T01:35:55Z"},{"alias_kind":"pith_short_8","alias_value":"5PN6FGGJ","created_at":"2026-07-05T01:35:55Z"}],"events":[{"event_type":"record_created","subject_pith_number":"pith:2020:5PN6FGGJSEIV3E3BYSGM3DZY5H","target":"record","payload":{"canonical_record":{"source":{"id":"2009.07692","kind":"arxiv","version":1},"metadata":{"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"cs.AR","submitted_at":"2020-09-16T13:54:33Z","cross_cats_sorted":["q-bio.GN"],"title_canon_sha256":"0eac702c86422fc4d93f72ee97daf57d28d2515cf1513ca36c6e905ab6fc6210","abstract_canon_sha256":"d5befb0494efef4eafcc7a61cdab357c66741f968723ccc8bdcec6190e9c08f3"},"schema_version":"1.0"},"canonical_sha256":"ebdbe298c991115d9361c48ccd8f38e9d4fc9be92e469946a6350acee95bd53c","receipt":{"kind":"pith_receipt","key_id":"pith-v1-2026-05","algorithm":"ed25519","signed_at":"2026-07-05T01:35:55.140546Z","signature_b64":"TR6tf0vz8rY0OHhbK1MBgkKS9YqENdhmhjZA9BirL1od5slwE+CYfl443XAb6Y1MJlJYX66JxmuwU4C7j7YDBg==","signed_message":"canonical_sha256_bytes","builder_version":"pith-number-builder-2026-05-17-v1","receipt_version":"0.3","canonical_sha256":"ebdbe298c991115d9361c48ccd8f38e9d4fc9be92e469946a6350acee95bd53c","last_reissued_at":"2026-07-05T01:35:55.140077Z","signature_status":"signed_v1","first_computed_at":"2026-07-05T01:35:55.140077Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"source_kind":"arxiv","source_id":"2009.07692","source_version":1,"attestation_state":"computed"},"signer":{"signer_id":"pith.science","signer_type":"pith_registry","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"created_at":"2026-07-05T01:35:55Z","supersedes":[],"prev_event":null,"signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"Sxx51p8seO1Uv0Nb13a1MKp9AH7885fB1JmzHrOhGqSfaX4tG0Sn5WN+/XuKrAUBnCzo2YD0kP+Nl2VxC7aPDg==","signed_message":"open_graph_event_sha256_bytes","signed_at":"2026-08-18T00:10:56.517817Z"},"content_sha256":"303e18281751c453bebb2076c0dc9090cad7420c0502fde45670ef9728c177d3","schema_version":"1.0","event_id":"sha256:303e18281751c453bebb2076c0dc9090cad7420c0502fde45670ef9728c177d3"},{"event_type":"graph_snapshot","subject_pith_number":"pith:2020:5PN6FGGJSEIV3E3BYSGM3DZY5H","target":"graph","payload":{"graph_snapshot":{"paper":{"title":"GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","headline":"","cross_cats":["q-bio.GN"],"primary_cat":"cs.AR","authors_text":"Allison Scibisz, Amirali Boroumand, Anant Nori, Can Alkan, Can Firtina, Damla Senol Cali, Gurpreet S. Kalsi, Jeremie S. Kim, Juan Gomez-Luna, Lavanya Subramanian, Mohammed Alser, Onur Mutlu, Rachata Ausavarungnirun, Saugata Ghose, Sreenivas Subramoney, Z\\\"ulal Bing\\\"ol","submitted_at":"2020-09-16T13:54:33Z","abstract_excerpt":"Genome sequence analysis has enabled significant advancements in medical and scientific areas such as personalized medicine, outbreak tracing, and the understanding of evolution. Unfortunately, it is currently bottlenecked by the computational power and memory bandwidth limitations of existing systems, as many of the steps in genome sequence analysis must process a large amount of data. A major contributor to this bottleneck is approximate string matching (ASM).\n  We propose GenASM, the first ASM acceleration framework for genome sequence analysis. We modify the underlying ASM algorithm (Bitap"},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"2009.07692","kind":"arxiv","version":1},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"integrity":{"clean":true,"summary":{"advisory":0,"critical":0,"by_detector":{},"informational":0},"endpoint":"/pith/2009.07692/integrity.json","findings":[],"available":true,"detectors_run":[],"snapshot_sha256":"c28c3603d3b5d939e8dc4c7e95fa8dfce3d595e45f758748cecf8e644a296938"},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"},"verdict_id":null},"signer":{"signer_id":"pith.science","signer_type":"pith_registry","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"created_at":"2026-07-05T01:35:55Z","supersedes":[],"prev_event":null,"signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"0E5PZvdkwXWD3MFYWZVrLm1sFhLUBOgQpYjrqYyIJaC3lpsmapJdtDEXJ7QwRyU8AEeJuTBmp08jPgBUEAgjDg==","signed_message":"open_graph_event_sha256_bytes","signed_at":"2026-08-18T00:10:56.518762Z"},"content_sha256":"96c2ba1e2bc3753803698eb699eb94fe2196d616a3614446fcf464a89053064f","schema_version":"1.0","event_id":"sha256:96c2ba1e2bc3753803698eb699eb94fe2196d616a3614446fcf464a89053064f"}],"timestamp_proofs":[],"mirror_hints":[{"mirror_type":"https","name":"Pith Resolver","base_url":"https://pith.science","bundle_url":"https://pith.science/pith/5PN6FGGJSEIV3E3BYSGM3DZY5H/bundle.json","state_url":"https://pith.science/pith/5PN6FGGJSEIV3E3BYSGM3DZY5H/state.json","well_known_bundle_url":"https://pith.science/.well-known/pith/5PN6FGGJSEIV3E3BYSGM3DZY5H/bundle.json","status":"primary"}],"public_keys":[{"key_id":"pith-v1-2026-05","algorithm":"ed25519","format":"raw","public_key_b64":"stVStoiQhXFxp4s2pdzPNoqVNBMojDU/fJ2db5S3CbM=","public_key_hex":"b2d552b68890857171a78b36a5dccf368a953413288c353f7c9d9d6f94b709b3","fingerprint_sha256_b32_first128bits":"RVFV5Z2OI2J3ZUO7ERDEBCYNKS","fingerprint_sha256_hex":"8d4b5ee74e4693bcd1df2446408b0d54","rotates_at":null,"url":"https://pith.science/pith-signing-key.json","notes":"Pith uses this Ed25519 key to sign canonical record SHA-256 digests. Verify with: ed25519_verify(public_key, message=canonical_sha256_bytes, signature=base64decode(signature_b64))."}],"merge_version":"pith-open-graph-merge-v1","built_at":"2026-08-18T00:10:56Z","links":{"resolver":"https://pith.science/pith/5PN6FGGJSEIV3E3BYSGM3DZY5H","bundle":"https://pith.science/pith/5PN6FGGJSEIV3E3BYSGM3DZY5H/bundle.json","state":"https://pith.science/pith/5PN6FGGJSEIV3E3BYSGM3DZY5H/state.json","well_known_bundle":"https://pith.science/.well-known/pith/5PN6FGGJSEIV3E3BYSGM3DZY5H/bundle.json"},"state":{"state_type":"pith_open_graph_state","state_version":"1.0","pith_number":"pith:2020:5PN6FGGJSEIV3E3BYSGM3DZY5H","merge_version":"pith-open-graph-merge-v1","event_count":2,"valid_event_count":2,"invalid_event_count":0,"equivocation_count":0,"current":{"canonical_record":{"metadata":{"abstract_canon_sha256":"d5befb0494efef4eafcc7a61cdab357c66741f968723ccc8bdcec6190e9c08f3","cross_cats_sorted":["q-bio.GN"],"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"cs.AR","submitted_at":"2020-09-16T13:54:33Z","title_canon_sha256":"0eac702c86422fc4d93f72ee97daf57d28d2515cf1513ca36c6e905ab6fc6210"},"schema_version":"1.0","source":{"id":"2009.07692","kind":"arxiv","version":1}},"source_aliases":[{"alias_kind":"arxiv","alias_value":"2009.07692","created_at":"2026-07-05T01:35:55Z"},{"alias_kind":"arxiv_version","alias_value":"2009.07692v1","created_at":"2026-07-05T01:35:55Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.2009.07692","created_at":"2026-07-05T01:35:55Z"},{"alias_kind":"pith_short_12","alias_value":"5PN6FGGJSEIV","created_at":"2026-07-05T01:35:55Z"},{"alias_kind":"pith_short_16","alias_value":"5PN6FGGJSEIV3E3B","created_at":"2026-07-05T01:35:55Z"},{"alias_kind":"pith_short_8","alias_value":"5PN6FGGJ","created_at":"2026-07-05T01:35:55Z"}],"graph_snapshots":[{"event_id":"sha256:96c2ba1e2bc3753803698eb699eb94fe2196d616a3614446fcf464a89053064f","target":"graph","created_at":"2026-07-05T01:35:55Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"graph_snapshot":{"author_claims":{"count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","strong_count":0},"builder_version":"pith-number-builder-2026-05-17-v1","claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"integrity":{"available":true,"clean":true,"detectors_run":[],"endpoint":"/pith/2009.07692/integrity.json","findings":[],"snapshot_sha256":"c28c3603d3b5d939e8dc4c7e95fa8dfce3d595e45f758748cecf8e644a296938","summary":{"advisory":0,"by_detector":{},"critical":0,"informational":0}},"paper":{"abstract_excerpt":"Genome sequence analysis has enabled significant advancements in medical and scientific areas such as personalized medicine, outbreak tracing, and the understanding of evolution. Unfortunately, it is currently bottlenecked by the computational power and memory bandwidth limitations of existing systems, as many of the steps in genome sequence analysis must process a large amount of data. A major contributor to this bottleneck is approximate string matching (ASM).\n  We propose GenASM, the first ASM acceleration framework for genome sequence analysis. We modify the underlying ASM algorithm (Bitap","authors_text":"Allison Scibisz, Amirali Boroumand, Anant Nori, Can Alkan, Can Firtina, Damla Senol Cali, Gurpreet S. Kalsi, Jeremie S. Kim, Juan Gomez-Luna, Lavanya Subramanian, Mohammed Alser, Onur Mutlu, Rachata Ausavarungnirun, Saugata Ghose, Sreenivas Subramoney, Z\\\"ulal Bing\\\"ol","cross_cats":["q-bio.GN"],"headline":"","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"cs.AR","submitted_at":"2020-09-16T13:54:33Z","title":"GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis"},"references":{"count":0,"internal_anchors":0,"resolved_work":0,"sample":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"2009.07692","kind":"arxiv","version":1},"verdict":{"created_at":null,"id":null,"model_set":{},"one_line_summary":"","pipeline_version":null,"pith_extraction_headline":"","strongest_claim":"","weakest_assumption":""}},"verdict_id":null}}],"author_attestations":[],"timestamp_anchors":[],"storage_attestations":[],"citation_signatures":[],"replication_records":[],"corrections":[],"mirror_hints":[],"record_created":{"event_id":"sha256:303e18281751c453bebb2076c0dc9090cad7420c0502fde45670ef9728c177d3","target":"record","created_at":"2026-07-05T01:35:55Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"attestation_state":"computed","canonical_record":{"metadata":{"abstract_canon_sha256":"d5befb0494efef4eafcc7a61cdab357c66741f968723ccc8bdcec6190e9c08f3","cross_cats_sorted":["q-bio.GN"],"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"cs.AR","submitted_at":"2020-09-16T13:54:33Z","title_canon_sha256":"0eac702c86422fc4d93f72ee97daf57d28d2515cf1513ca36c6e905ab6fc6210"},"schema_version":"1.0","source":{"id":"2009.07692","kind":"arxiv","version":1}},"canonical_sha256":"ebdbe298c991115d9361c48ccd8f38e9d4fc9be92e469946a6350acee95bd53c","receipt":{"algorithm":"ed25519","builder_version":"pith-number-builder-2026-05-17-v1","canonical_sha256":"ebdbe298c991115d9361c48ccd8f38e9d4fc9be92e469946a6350acee95bd53c","first_computed_at":"2026-07-05T01:35:55.140077Z","key_id":"pith-v1-2026-05","kind":"pith_receipt","last_reissued_at":"2026-07-05T01:35:55.140077Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","receipt_version":"0.3","signature_b64":"TR6tf0vz8rY0OHhbK1MBgkKS9YqENdhmhjZA9BirL1od5slwE+CYfl443XAb6Y1MJlJYX66JxmuwU4C7j7YDBg==","signature_status":"signed_v1","signed_at":"2026-07-05T01:35:55.140546Z","signed_message":"canonical_sha256_bytes"},"source_id":"2009.07692","source_kind":"arxiv","source_version":1}}},"equivocations":[],"invalid_events":[],"applied_event_ids":["sha256:303e18281751c453bebb2076c0dc9090cad7420c0502fde45670ef9728c177d3","sha256:96c2ba1e2bc3753803698eb699eb94fe2196d616a3614446fcf464a89053064f"],"state_sha256":"b84887185cdb89020c211ce53a00b1c0e7259bb4cdb843cd085b3117cf1c98d4"},"bundle_signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"KD6gxVUepQVeQBYhXlDzne3Sy/Rs+948OOK0nRpFqjHib1PYoGJpfwlNgjTsOTC1k4e0bjDSCL3a8E3hT6qsAQ==","signed_message":"bundle_sha256_bytes","signed_at":"2026-08-18T00:10:56.525049Z","bundle_sha256":"71f05f3c1b7a615f5f1d4657217cc470b3ee16d20d6431747635bc448b0851ad"}}