{"state_type":"pith_open_graph_state","state_version":"1.0","pith_number":"pith:2026:5XQIQFE5LUPKJPF6WCDYEO724I","merge_version":"pith-open-graph-merge-v1","event_count":2,"valid_event_count":2,"invalid_event_count":0,"equivocation_count":0,"current":{"canonical_record":{"metadata":{"abstract_canon_sha256":"749194581637eddc1fdda2dcefc9842578375c76be75bd6a31ce9850a7320d2e","cross_cats_sorted":[],"license":"http://creativecommons.org/licenses/by/4.0/","primary_cat":"q-bio.QM","submitted_at":"2026-06-04T22:19:42Z","title_canon_sha256":"0cb4c05690e39a0c8f5e53084a784843e4ad641f5453bcafa15bb4156a781c5f"},"schema_version":"1.0","source":{"id":"2606.06749","kind":"arxiv","version":1}},"source_aliases":[{"alias_kind":"arxiv","alias_value":"2606.06749","created_at":"2026-06-08T01:04:26Z"},{"alias_kind":"arxiv_version","alias_value":"2606.06749v1","created_at":"2026-06-08T01:04:26Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.2606.06749","created_at":"2026-06-08T01:04:26Z"},{"alias_kind":"pith_short_12","alias_value":"5XQIQFE5LUPK","created_at":"2026-06-08T01:04:26Z"},{"alias_kind":"pith_short_16","alias_value":"5XQIQFE5LUPKJPF6","created_at":"2026-06-08T01:04:26Z"},{"alias_kind":"pith_short_8","alias_value":"5XQIQFE5","created_at":"2026-06-08T01:04:26Z"}],"graph_snapshots":[{"event_id":"sha256:efc68567fd9b7b518703a0344c12871dc0605305da24d1b695bb676f90cdca29","target":"graph","created_at":"2026-06-08T01:04:26Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"graph_snapshot":{"author_claims":{"count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","strong_count":0},"builder_version":"pith-number-builder-2026-05-17-v1","claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"integrity":{"available":true,"clean":true,"detectors_run":[],"endpoint":"/pith/2606.06749/integrity.json","findings":[],"snapshot_sha256":"c28c3603d3b5d939e8dc4c7e95fa8dfce3d595e45f758748cecf8e644a296938","summary":{"advisory":0,"by_detector":{},"critical":0,"informational":0}},"paper":{"abstract_excerpt":"Public viral genome resources such as the National Center for Biotechnology Information (NCBI) Virus database are central to outbreak response, evolutionary analysis, vaccine design, and genomic surveillance. Yet many high-value retrieval workflows remain optimized for interactive use rather than deterministic, reproducible programmatic interfaces. This creates a challenge for Large Language Model (LLM)-based scientific agents, where errors in metadata interpretation, filtering logic, or retrieval can propagate into incorrect datasets. To evaluate agentic viral data retrieval, we built VirBenc","authors_text":"Bernhard Y. Renard, Ferdous Nasri, Jonah Cool, Krithik Ramesh, Laura Luebbert, Nuala A. O'Leary, Pardis C. Sabeti, Patrick Varilly, Sarah Gurev","cross_cats":[],"headline":"","license":"http://creativecommons.org/licenses/by/4.0/","primary_cat":"q-bio.QM","submitted_at":"2026-06-04T22:19:42Z","title":"Deterministic access to global viral sequence data enables robust agentic scientific discovery"},"references":{"count":0,"internal_anchors":0,"resolved_work":0,"sample":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"2606.06749","kind":"arxiv","version":1},"verdict":{"created_at":null,"id":null,"model_set":{},"one_line_summary":"","pipeline_version":null,"pith_extraction_headline":"","strongest_claim":"","weakest_assumption":""}},"verdict_id":null}}],"author_attestations":[],"timestamp_anchors":[],"storage_attestations":[],"citation_signatures":[],"replication_records":[],"corrections":[],"mirror_hints":[],"record_created":{"event_id":"sha256:fe18236a3254cc7811bebd30428bdf91a22b8f30da6752b03a7c11902c6790b7","target":"record","created_at":"2026-06-08T01:04:26Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"attestation_state":"computed","canonical_record":{"metadata":{"abstract_canon_sha256":"749194581637eddc1fdda2dcefc9842578375c76be75bd6a31ce9850a7320d2e","cross_cats_sorted":[],"license":"http://creativecommons.org/licenses/by/4.0/","primary_cat":"q-bio.QM","submitted_at":"2026-06-04T22:19:42Z","title_canon_sha256":"0cb4c05690e39a0c8f5e53084a784843e4ad641f5453bcafa15bb4156a781c5f"},"schema_version":"1.0","source":{"id":"2606.06749","kind":"arxiv","version":1}},"canonical_sha256":"ede088149d5d1ea4bcbeb087823bfae2278d5e47111e4a6f4315fa43f5abe98e","receipt":{"algorithm":"ed25519","builder_version":"pith-number-builder-2026-05-17-v1","canonical_sha256":"ede088149d5d1ea4bcbeb087823bfae2278d5e47111e4a6f4315fa43f5abe98e","first_computed_at":"2026-06-08T01:04:26.416555Z","key_id":"pith-v1-2026-05","kind":"pith_receipt","last_reissued_at":"2026-06-08T01:04:26.416555Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","receipt_version":"0.3","signature_b64":"CVXpiISJFLyoKWGYc3CCSqaRePeZje1ey2A/lUS+qMijYj9OKAYQoXlB5gRdVLpdQtlmZM4QcvxHswHZKcmiBA==","signature_status":"signed_v1","signed_at":"2026-06-08T01:04:26.417300Z","signed_message":"canonical_sha256_bytes"},"source_id":"2606.06749","source_kind":"arxiv","source_version":1}}},"equivocations":[],"invalid_events":[],"applied_event_ids":["sha256:fe18236a3254cc7811bebd30428bdf91a22b8f30da6752b03a7c11902c6790b7","sha256:efc68567fd9b7b518703a0344c12871dc0605305da24d1b695bb676f90cdca29"],"state_sha256":"baecb0dbb3e8b2103db97e7b5c32182097fad3b3f856a08e8da472caa78c3b00"}