{"record_type":"pith_number_record","schema_url":"https://pith.science/schemas/pith-number/v1.json","pith_number":"pith:2023:6FJEPMPHARTAWWS6635H5SJR5U","short_pith_number":"pith:6FJEPMPH","schema_version":"1.0","canonical_sha256":"f15247b1e704660b5a5ef6fa7ec931ed104949d5bf971a9866c209b54fe7fd61","source":{"kind":"arxiv","id":"2308.06288","version":1},"attestation_state":"computed","paper":{"title":"Spatial Pathomics Toolkit for Quantitative Analysis of Podocyte Nuclei with Histology and Spatial Transcriptomics Data in Renal Pathology","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","headline":"","cross_cats":["cs.CV","eess.IV"],"primary_cat":"q-bio.QM","authors_text":"Agnes B. Fogo, Can Cui, Haichun Yang, Jianyong Zhong, Jiayuan Chen, Quan Liu, Ruining Deng, Shilin Zhao, Tianyuan Yao, Yilin Liu, Yuankai Huo, Yu Wang","submitted_at":"2023-08-10T17:16:52Z","abstract_excerpt":"Podocytes, specialized epithelial cells that envelop the glomerular capillaries, play a pivotal role in maintaining renal health. The current description and quantification of features on pathology slides are limited, prompting the need for innovative solutions to comprehensively assess diverse phenotypic attributes within Whole Slide Images (WSIs). In particular, understanding the morphological characteristics of podocytes, terminally differentiated glomerular epithelial cells, is crucial for studying glomerular injury. This paper introduces the Spatial Pathomics Toolkit (SPT) and applies it "},"verification_status":{"content_addressed":true,"pith_receipt":true,"author_attested":false,"weak_author_claims":0,"strong_author_claims":0,"externally_anchored":false,"storage_verified":false,"citation_signatures":0,"replication_records":0,"graph_snapshot":true,"references_resolved":false,"formal_links_present":false},"canonical_record":{"source":{"id":"2308.06288","kind":"arxiv","version":1},"metadata":{"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.QM","submitted_at":"2023-08-10T17:16:52Z","cross_cats_sorted":["cs.CV","eess.IV"],"title_canon_sha256":"32f2bae2c1e004ccf170b80dcd78f2e24d1952426336a7fb687a87530274d43c","abstract_canon_sha256":"e3d9c944c8db6bdf9123ab89b02fbcb8830d824faaf72b910fb56bd7b8f1b1da"},"schema_version":"1.0"},"receipt":{"kind":"pith_receipt","key_id":"pith-v1-2026-05","algorithm":"ed25519","signed_at":"2026-07-05T06:40:37.516519Z","signature_b64":"XA9EilNOlVdJNQnYD7X63rlJ+2S9qdLCcFxd0dA2qvMpZUssE6L1j/K+0Jw4qmlT+jJsCrjWqhjofh7zgngYAg==","signed_message":"canonical_sha256_bytes","builder_version":"pith-number-builder-2026-05-17-v1","receipt_version":"0.3","canonical_sha256":"f15247b1e704660b5a5ef6fa7ec931ed104949d5bf971a9866c209b54fe7fd61","last_reissued_at":"2026-07-05T06:40:37.516086Z","signature_status":"signed_v1","first_computed_at":"2026-07-05T06:40:37.516086Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"graph_snapshot":{"paper":{"title":"Spatial Pathomics Toolkit for Quantitative Analysis of Podocyte Nuclei with Histology and Spatial Transcriptomics Data in Renal Pathology","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","headline":"","cross_cats":["cs.CV","eess.IV"],"primary_cat":"q-bio.QM","authors_text":"Agnes B. Fogo, Can Cui, Haichun Yang, Jianyong Zhong, Jiayuan Chen, Quan Liu, Ruining Deng, Shilin Zhao, Tianyuan Yao, Yilin Liu, Yuankai Huo, Yu Wang","submitted_at":"2023-08-10T17:16:52Z","abstract_excerpt":"Podocytes, specialized epithelial cells that envelop the glomerular capillaries, play a pivotal role in maintaining renal health. The current description and quantification of features on pathology slides are limited, prompting the need for innovative solutions to comprehensively assess diverse phenotypic attributes within Whole Slide Images (WSIs). In particular, understanding the morphological characteristics of podocytes, terminally differentiated glomerular epithelial cells, is crucial for studying glomerular injury. This paper introduces the Spatial Pathomics Toolkit (SPT) and applies it "},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"2308.06288","kind":"arxiv","version":1},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"integrity":{"clean":true,"summary":{"advisory":0,"critical":0,"by_detector":{},"informational":0},"endpoint":"/pith/2308.06288/integrity.json","findings":[],"available":true,"detectors_run":[],"snapshot_sha256":"c28c3603d3b5d939e8dc4c7e95fa8dfce3d595e45f758748cecf8e644a296938"},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"},"aliases":[{"alias_kind":"arxiv","alias_value":"2308.06288","created_at":"2026-07-05T06:40:37.516148+00:00"},{"alias_kind":"arxiv_version","alias_value":"2308.06288v1","created_at":"2026-07-05T06:40:37.516148+00:00"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.2308.06288","created_at":"2026-07-05T06:40:37.516148+00:00"},{"alias_kind":"pith_short_12","alias_value":"6FJEPMPHARTA","created_at":"2026-07-05T06:40:37.516148+00:00"},{"alias_kind":"pith_short_16","alias_value":"6FJEPMPHARTAWWS6","created_at":"2026-07-05T06:40:37.516148+00:00"},{"alias_kind":"pith_short_8","alias_value":"6FJEPMPH","created_at":"2026-07-05T06:40:37.516148+00:00"}],"events":[],"event_summary":{},"paper_claims":[],"inbound_citations":{"count":0,"internal_anchor_count":0,"sample":[]},"formal_canon":{"evidence_count":0,"sample":[],"anchors":[]},"links":{"html":"https://pith.science/pith/6FJEPMPHARTAWWS6635H5SJR5U","json":"https://pith.science/pith/6FJEPMPHARTAWWS6635H5SJR5U.json","graph_json":"https://pith.science/api/pith-number/6FJEPMPHARTAWWS6635H5SJR5U/graph.json","events_json":"https://pith.science/api/pith-number/6FJEPMPHARTAWWS6635H5SJR5U/events.json","paper":"https://pith.science/paper/6FJEPMPH"},"agent_actions":{"view_html":"https://pith.science/pith/6FJEPMPHARTAWWS6635H5SJR5U","download_json":"https://pith.science/pith/6FJEPMPHARTAWWS6635H5SJR5U.json","view_paper":"https://pith.science/paper/6FJEPMPH","resolve_alias":"https://pith.science/api/pith-number/resolve?arxiv=2308.06288&json=true","fetch_graph":"https://pith.science/api/pith-number/6FJEPMPHARTAWWS6635H5SJR5U/graph.json","fetch_events":"https://pith.science/api/pith-number/6FJEPMPHARTAWWS6635H5SJR5U/events.json","actions":{"anchor_timestamp":"https://pith.science/pith/6FJEPMPHARTAWWS6635H5SJR5U/action/timestamp_anchor","attest_storage":"https://pith.science/pith/6FJEPMPHARTAWWS6635H5SJR5U/action/storage_attestation","attest_author":"https://pith.science/pith/6FJEPMPHARTAWWS6635H5SJR5U/action/author_attestation","sign_citation":"https://pith.science/pith/6FJEPMPHARTAWWS6635H5SJR5U/action/citation_signature","submit_replication":"https://pith.science/pith/6FJEPMPHARTAWWS6635H5SJR5U/action/replication_record"}},"created_at":"2026-07-05T06:40:37.516148+00:00","updated_at":"2026-07-05T06:40:37.516148+00:00"}