{"record_type":"pith_number_record","schema_url":"https://pith.science/schemas/pith-number/v1.json","pith_number":"pith:2024:7BAESBBJTS4JWWLPV3UP6AG6RF","short_pith_number":"pith:7BAESBBJ","schema_version":"1.0","canonical_sha256":"f8404904299cb89b596faee8ff00de895fc7f998008f1a75c4aad8eeb72c8316","source":{"kind":"arxiv","id":"2410.11021","version":1},"attestation_state":"computed","paper":{"title":"MAFin: Motif Detection in Multiple Alignment Files","license":"http://creativecommons.org/licenses/by-sa/4.0/","headline":"","cross_cats":[],"primary_cat":"q-bio.QM","authors_text":"Fotis A. Baltoumas, Georgios A. Pavlopoulos, Ilias Georgakopoulos-Soares, Ioannis Mouratidis, Kimonas Provatas, Michail Patsakis, Nikol Chantzi","submitted_at":"2024-10-14T19:18:18Z","abstract_excerpt":"Motivation: Genome and Proteome Alignments, represented by the Multiple Alignment File (MAF) format, have become a standard approach in the field of comparative genomics and proteomics. However, current approaches lack a direct method for motif detection within MAF files. To address this gap, we present MAFin, a novel tool that enables efficient motif detection and conservation analysis in MAF files, streamlining genomic and proteomic research.\n  Results: We developed MAFin, the first motif detection tool for Multiple Alignment Format files. MAFin enables the multithreaded search of conserved "},"verification_status":{"content_addressed":true,"pith_receipt":true,"author_attested":false,"weak_author_claims":0,"strong_author_claims":0,"externally_anchored":false,"storage_verified":false,"citation_signatures":0,"replication_records":0,"graph_snapshot":true,"references_resolved":false,"formal_links_present":false},"canonical_record":{"source":{"id":"2410.11021","kind":"arxiv","version":1},"metadata":{"license":"http://creativecommons.org/licenses/by-sa/4.0/","primary_cat":"q-bio.QM","submitted_at":"2024-10-14T19:18:18Z","cross_cats_sorted":[],"title_canon_sha256":"93848f2945a86ad796654c4980be87d3905fb88397f75db6275587b8bb690bc2","abstract_canon_sha256":"4152e7bcc2cf0dbdb23736cc2d742c4d987bfcfa2021b127c773a86b26dd50f5"},"schema_version":"1.0"},"receipt":{"kind":"pith_receipt","key_id":"pith-v1-2026-05","algorithm":"ed25519","signed_at":"2026-07-05T09:20:28.197961Z","signature_b64":"BJb2uUSIxnyEWimlN+XlnX2Y5TYBku1qFMA5l+y6YfaJWAb3+M7L//Qb1ryY+ZFBatdB/to2KYKY1MSpPkKICQ==","signed_message":"canonical_sha256_bytes","builder_version":"pith-number-builder-2026-05-17-v1","receipt_version":"0.3","canonical_sha256":"f8404904299cb89b596faee8ff00de895fc7f998008f1a75c4aad8eeb72c8316","last_reissued_at":"2026-07-05T09:20:28.197488Z","signature_status":"signed_v1","first_computed_at":"2026-07-05T09:20:28.197488Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"graph_snapshot":{"paper":{"title":"MAFin: Motif Detection in Multiple Alignment Files","license":"http://creativecommons.org/licenses/by-sa/4.0/","headline":"","cross_cats":[],"primary_cat":"q-bio.QM","authors_text":"Fotis A. Baltoumas, Georgios A. Pavlopoulos, Ilias Georgakopoulos-Soares, Ioannis Mouratidis, Kimonas Provatas, Michail Patsakis, Nikol Chantzi","submitted_at":"2024-10-14T19:18:18Z","abstract_excerpt":"Motivation: Genome and Proteome Alignments, represented by the Multiple Alignment File (MAF) format, have become a standard approach in the field of comparative genomics and proteomics. However, current approaches lack a direct method for motif detection within MAF files. To address this gap, we present MAFin, a novel tool that enables efficient motif detection and conservation analysis in MAF files, streamlining genomic and proteomic research.\n  Results: We developed MAFin, the first motif detection tool for Multiple Alignment Format files. MAFin enables the multithreaded search of conserved "},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"2410.11021","kind":"arxiv","version":1},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"integrity":{"clean":true,"summary":{"advisory":0,"critical":0,"by_detector":{},"informational":0},"endpoint":"/pith/2410.11021/integrity.json","findings":[],"available":true,"detectors_run":[],"snapshot_sha256":"c28c3603d3b5d939e8dc4c7e95fa8dfce3d595e45f758748cecf8e644a296938"},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"},"aliases":[{"alias_kind":"arxiv","alias_value":"2410.11021","created_at":"2026-07-05T09:20:28.197556+00:00"},{"alias_kind":"arxiv_version","alias_value":"2410.11021v1","created_at":"2026-07-05T09:20:28.197556+00:00"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.2410.11021","created_at":"2026-07-05T09:20:28.197556+00:00"},{"alias_kind":"pith_short_12","alias_value":"7BAESBBJTS4J","created_at":"2026-07-05T09:20:28.197556+00:00"},{"alias_kind":"pith_short_16","alias_value":"7BAESBBJTS4JWWLP","created_at":"2026-07-05T09:20:28.197556+00:00"},{"alias_kind":"pith_short_8","alias_value":"7BAESBBJ","created_at":"2026-07-05T09:20:28.197556+00:00"}],"events":[],"event_summary":{},"paper_claims":[],"inbound_citations":{"count":0,"internal_anchor_count":0,"sample":[]},"formal_canon":{"evidence_count":0,"sample":[],"anchors":[]},"links":{"html":"https://pith.science/pith/7BAESBBJTS4JWWLPV3UP6AG6RF","json":"https://pith.science/pith/7BAESBBJTS4JWWLPV3UP6AG6RF.json","graph_json":"https://pith.science/api/pith-number/7BAESBBJTS4JWWLPV3UP6AG6RF/graph.json","events_json":"https://pith.science/api/pith-number/7BAESBBJTS4JWWLPV3UP6AG6RF/events.json","paper":"https://pith.science/paper/7BAESBBJ"},"agent_actions":{"view_html":"https://pith.science/pith/7BAESBBJTS4JWWLPV3UP6AG6RF","download_json":"https://pith.science/pith/7BAESBBJTS4JWWLPV3UP6AG6RF.json","view_paper":"https://pith.science/paper/7BAESBBJ","resolve_alias":"https://pith.science/api/pith-number/resolve?arxiv=2410.11021&json=true","fetch_graph":"https://pith.science/api/pith-number/7BAESBBJTS4JWWLPV3UP6AG6RF/graph.json","fetch_events":"https://pith.science/api/pith-number/7BAESBBJTS4JWWLPV3UP6AG6RF/events.json","actions":{"anchor_timestamp":"https://pith.science/pith/7BAESBBJTS4JWWLPV3UP6AG6RF/action/timestamp_anchor","attest_storage":"https://pith.science/pith/7BAESBBJTS4JWWLPV3UP6AG6RF/action/storage_attestation","attest_author":"https://pith.science/pith/7BAESBBJTS4JWWLPV3UP6AG6RF/action/author_attestation","sign_citation":"https://pith.science/pith/7BAESBBJTS4JWWLPV3UP6AG6RF/action/citation_signature","submit_replication":"https://pith.science/pith/7BAESBBJTS4JWWLPV3UP6AG6RF/action/replication_record"}},"created_at":"2026-07-05T09:20:28.197556+00:00","updated_at":"2026-07-05T09:20:28.197556+00:00"}