{"bundle_type":"pith_open_graph_bundle","bundle_version":"1.0","pith_number":"pith:2017:7QUS6LF7AUDWS2FVTQWBKUL6CC","short_pith_number":"pith:7QUS6LF7","canonical_record":{"source":{"id":"1702.07246","kind":"arxiv","version":2},"metadata":{"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.GN","submitted_at":"2017-02-23T14:57:48Z","cross_cats_sorted":[],"title_canon_sha256":"71e3f6242c32891b556806efe51c83bc9f602f83bc6211bb532a2b0a6da1ab53","abstract_canon_sha256":"49c7a783f6881cfd45d62b6c1991b3ca9b89bb78d5bed44f6c6faec30528e43b"},"schema_version":"1.0"},"canonical_sha256":"fc292f2cbf05076968b59c2c15517e10a3434a26b679884a3ce6c08321d1d662","source":{"kind":"arxiv","id":"1702.07246","version":2},"source_aliases":[{"alias_kind":"arxiv","alias_value":"1702.07246","created_at":"2026-05-18T00:35:41Z"},{"alias_kind":"arxiv_version","alias_value":"1702.07246v2","created_at":"2026-05-18T00:35:41Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.1702.07246","created_at":"2026-05-18T00:35:41Z"},{"alias_kind":"pith_short_12","alias_value":"7QUS6LF7AUDW","created_at":"2026-05-18T12:31:05Z"},{"alias_kind":"pith_short_16","alias_value":"7QUS6LF7AUDWS2FV","created_at":"2026-05-18T12:31:05Z"},{"alias_kind":"pith_short_8","alias_value":"7QUS6LF7","created_at":"2026-05-18T12:31:05Z"}],"events":[{"event_type":"record_created","subject_pith_number":"pith:2017:7QUS6LF7AUDWS2FVTQWBKUL6CC","target":"record","payload":{"canonical_record":{"source":{"id":"1702.07246","kind":"arxiv","version":2},"metadata":{"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.GN","submitted_at":"2017-02-23T14:57:48Z","cross_cats_sorted":[],"title_canon_sha256":"71e3f6242c32891b556806efe51c83bc9f602f83bc6211bb532a2b0a6da1ab53","abstract_canon_sha256":"49c7a783f6881cfd45d62b6c1991b3ca9b89bb78d5bed44f6c6faec30528e43b"},"schema_version":"1.0"},"canonical_sha256":"fc292f2cbf05076968b59c2c15517e10a3434a26b679884a3ce6c08321d1d662","receipt":{"kind":"pith_receipt","key_id":"pith-v1-2026-05","algorithm":"ed25519","signed_at":"2026-05-18T00:35:41.653000Z","signature_b64":"jWjnEJPNo0RZ5pI09B5zUj0uB6VfKC/hLwLw0FxI7uk1sAVWyNmxaBIQv0rSyKPOtspDkKaqsja74C+QjF0gAQ==","signed_message":"canonical_sha256_bytes","builder_version":"pith-number-builder-2026-05-17-v1","receipt_version":"0.3","canonical_sha256":"fc292f2cbf05076968b59c2c15517e10a3434a26b679884a3ce6c08321d1d662","last_reissued_at":"2026-05-18T00:35:41.652235Z","signature_status":"signed_v1","first_computed_at":"2026-05-18T00:35:41.652235Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"source_kind":"arxiv","source_id":"1702.07246","source_version":2,"attestation_state":"computed"},"signer":{"signer_id":"pith.science","signer_type":"pith_registry","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"created_at":"2026-05-18T00:35:41Z","supersedes":[],"prev_event":null,"signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"ZFwNajcIk7uAXEO/GA3HB1dgZ6dKaQA8BX3nKWz0fqT7+rGRVZE+N41E7nW6B3tHD3Yyb6pqjDbuwNxNq6LTAw==","signed_message":"open_graph_event_sha256_bytes","signed_at":"2026-05-24T12:15:05.714462Z"},"content_sha256":"6f982977779c768e54ed0a721b176b7ebb0014f0a18272d101b7da61c5dc9020","schema_version":"1.0","event_id":"sha256:6f982977779c768e54ed0a721b176b7ebb0014f0a18272d101b7da61c5dc9020"},{"event_type":"graph_snapshot","subject_pith_number":"pith:2017:7QUS6LF7AUDWS2FVTQWBKUL6CC","target":"graph","payload":{"graph_snapshot":{"paper":{"title":"Evidence-based gene models for structural and functional annotations of the oil palm genome","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","headline":"","cross_cats":[],"primary_cat":"q-bio.GN","authors_text":"Chan Kuang Lim, Denis Murphy, Jayanthi Nagappan, Leslie Low Eng Ti, Martin Triska, Mohd Amin Ab Halim, Mohd Firdaus-Raih, Nadzirah Amiruddin, Nik Shazana Nik Mohd Sanusi, Norazah Azizi, Petr Ponomarenko, Ravigadevi Sambanthamurthi, Rozana Rosli, Tatiana V. Tatarinova, Victor Solovyev","submitted_at":"2017-02-23T14:57:48Z","abstract_excerpt":"The advent of rapid and inexpensive DNA sequencing has led to an explosion of data waiting to be transformed into knowledge about genome organization and function. Gene prediction is customarily the starting point for genome analysis. This paper presents a bioinformatics study of the oil palm genome, including comparative genomics analysis, database and tools development, and mining of biological data for genes of interest. We have annotated 26,059 oil palm genes integrated from two independent gene-prediction pipelines, Fgenesh++ and Seqping. This integrated annotation constitutes a significa"},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"1702.07246","kind":"arxiv","version":2},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"},"verdict_id":null},"signer":{"signer_id":"pith.science","signer_type":"pith_registry","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"created_at":"2026-05-18T00:35:41Z","supersedes":[],"prev_event":null,"signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"ykZU793Fx3j0Ox3ajaaVszKQwrWkzGJC4mUT/eH65sj9zdtYwrWN5Jvd5+oCk0tHP9dItkpWhkan35d6KzaeBQ==","signed_message":"open_graph_event_sha256_bytes","signed_at":"2026-05-24T12:15:05.715179Z"},"content_sha256":"fcee6de77ac117e1626febebcb1cccdbbe419a0a32b5180a83b4a33eafed2e14","schema_version":"1.0","event_id":"sha256:fcee6de77ac117e1626febebcb1cccdbbe419a0a32b5180a83b4a33eafed2e14"}],"timestamp_proofs":[],"mirror_hints":[{"mirror_type":"https","name":"Pith Resolver","base_url":"https://pith.science","bundle_url":"https://pith.science/pith/7QUS6LF7AUDWS2FVTQWBKUL6CC/bundle.json","state_url":"https://pith.science/pith/7QUS6LF7AUDWS2FVTQWBKUL6CC/state.json","well_known_bundle_url":"https://pith.science/.well-known/pith/7QUS6LF7AUDWS2FVTQWBKUL6CC/bundle.json","status":"primary"}],"public_keys":[{"key_id":"pith-v1-2026-05","algorithm":"ed25519","format":"raw","public_key_b64":"stVStoiQhXFxp4s2pdzPNoqVNBMojDU/fJ2db5S3CbM=","public_key_hex":"b2d552b68890857171a78b36a5dccf368a953413288c353f7c9d9d6f94b709b3","fingerprint_sha256_b32_first128bits":"RVFV5Z2OI2J3ZUO7ERDEBCYNKS","fingerprint_sha256_hex":"8d4b5ee74e4693bcd1df2446408b0d54","rotates_at":null,"url":"https://pith.science/pith-signing-key.json","notes":"Pith uses this Ed25519 key to sign canonical record SHA-256 digests. Verify with: ed25519_verify(public_key, message=canonical_sha256_bytes, signature=base64decode(signature_b64))."}],"merge_version":"pith-open-graph-merge-v1","built_at":"2026-05-24T12:15:05Z","links":{"resolver":"https://pith.science/pith/7QUS6LF7AUDWS2FVTQWBKUL6CC","bundle":"https://pith.science/pith/7QUS6LF7AUDWS2FVTQWBKUL6CC/bundle.json","state":"https://pith.science/pith/7QUS6LF7AUDWS2FVTQWBKUL6CC/state.json","well_known_bundle":"https://pith.science/.well-known/pith/7QUS6LF7AUDWS2FVTQWBKUL6CC/bundle.json"},"state":{"state_type":"pith_open_graph_state","state_version":"1.0","pith_number":"pith:2017:7QUS6LF7AUDWS2FVTQWBKUL6CC","merge_version":"pith-open-graph-merge-v1","event_count":2,"valid_event_count":2,"invalid_event_count":0,"equivocation_count":0,"current":{"canonical_record":{"metadata":{"abstract_canon_sha256":"49c7a783f6881cfd45d62b6c1991b3ca9b89bb78d5bed44f6c6faec30528e43b","cross_cats_sorted":[],"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.GN","submitted_at":"2017-02-23T14:57:48Z","title_canon_sha256":"71e3f6242c32891b556806efe51c83bc9f602f83bc6211bb532a2b0a6da1ab53"},"schema_version":"1.0","source":{"id":"1702.07246","kind":"arxiv","version":2}},"source_aliases":[{"alias_kind":"arxiv","alias_value":"1702.07246","created_at":"2026-05-18T00:35:41Z"},{"alias_kind":"arxiv_version","alias_value":"1702.07246v2","created_at":"2026-05-18T00:35:41Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.1702.07246","created_at":"2026-05-18T00:35:41Z"},{"alias_kind":"pith_short_12","alias_value":"7QUS6LF7AUDW","created_at":"2026-05-18T12:31:05Z"},{"alias_kind":"pith_short_16","alias_value":"7QUS6LF7AUDWS2FV","created_at":"2026-05-18T12:31:05Z"},{"alias_kind":"pith_short_8","alias_value":"7QUS6LF7","created_at":"2026-05-18T12:31:05Z"}],"graph_snapshots":[{"event_id":"sha256:fcee6de77ac117e1626febebcb1cccdbbe419a0a32b5180a83b4a33eafed2e14","target":"graph","created_at":"2026-05-18T00:35:41Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"graph_snapshot":{"author_claims":{"count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","strong_count":0},"builder_version":"pith-number-builder-2026-05-17-v1","claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"paper":{"abstract_excerpt":"The advent of rapid and inexpensive DNA sequencing has led to an explosion of data waiting to be transformed into knowledge about genome organization and function. Gene prediction is customarily the starting point for genome analysis. This paper presents a bioinformatics study of the oil palm genome, including comparative genomics analysis, database and tools development, and mining of biological data for genes of interest. We have annotated 26,059 oil palm genes integrated from two independent gene-prediction pipelines, Fgenesh++ and Seqping. This integrated annotation constitutes a significa","authors_text":"Chan Kuang Lim, Denis Murphy, Jayanthi Nagappan, Leslie Low Eng Ti, Martin Triska, Mohd Amin Ab Halim, Mohd Firdaus-Raih, Nadzirah Amiruddin, Nik Shazana Nik Mohd Sanusi, Norazah Azizi, Petr Ponomarenko, Ravigadevi Sambanthamurthi, Rozana Rosli, Tatiana V. Tatarinova, Victor Solovyev","cross_cats":[],"headline":"","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.GN","submitted_at":"2017-02-23T14:57:48Z","title":"Evidence-based gene models for structural and functional annotations of the oil palm genome"},"references":{"count":0,"internal_anchors":0,"resolved_work":0,"sample":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"1702.07246","kind":"arxiv","version":2},"verdict":{"created_at":null,"id":null,"model_set":{},"one_line_summary":"","pipeline_version":null,"pith_extraction_headline":"","strongest_claim":"","weakest_assumption":""}},"verdict_id":null}}],"author_attestations":[],"timestamp_anchors":[],"storage_attestations":[],"citation_signatures":[],"replication_records":[],"corrections":[],"mirror_hints":[],"record_created":{"event_id":"sha256:6f982977779c768e54ed0a721b176b7ebb0014f0a18272d101b7da61c5dc9020","target":"record","created_at":"2026-05-18T00:35:41Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"attestation_state":"computed","canonical_record":{"metadata":{"abstract_canon_sha256":"49c7a783f6881cfd45d62b6c1991b3ca9b89bb78d5bed44f6c6faec30528e43b","cross_cats_sorted":[],"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.GN","submitted_at":"2017-02-23T14:57:48Z","title_canon_sha256":"71e3f6242c32891b556806efe51c83bc9f602f83bc6211bb532a2b0a6da1ab53"},"schema_version":"1.0","source":{"id":"1702.07246","kind":"arxiv","version":2}},"canonical_sha256":"fc292f2cbf05076968b59c2c15517e10a3434a26b679884a3ce6c08321d1d662","receipt":{"algorithm":"ed25519","builder_version":"pith-number-builder-2026-05-17-v1","canonical_sha256":"fc292f2cbf05076968b59c2c15517e10a3434a26b679884a3ce6c08321d1d662","first_computed_at":"2026-05-18T00:35:41.652235Z","key_id":"pith-v1-2026-05","kind":"pith_receipt","last_reissued_at":"2026-05-18T00:35:41.652235Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","receipt_version":"0.3","signature_b64":"jWjnEJPNo0RZ5pI09B5zUj0uB6VfKC/hLwLw0FxI7uk1sAVWyNmxaBIQv0rSyKPOtspDkKaqsja74C+QjF0gAQ==","signature_status":"signed_v1","signed_at":"2026-05-18T00:35:41.653000Z","signed_message":"canonical_sha256_bytes"},"source_id":"1702.07246","source_kind":"arxiv","source_version":2}}},"equivocations":[],"invalid_events":[],"applied_event_ids":["sha256:6f982977779c768e54ed0a721b176b7ebb0014f0a18272d101b7da61c5dc9020","sha256:fcee6de77ac117e1626febebcb1cccdbbe419a0a32b5180a83b4a33eafed2e14"],"state_sha256":"fc336fa65bdf6da3241d939f55cb8138f77aaf8c0cfdcf5c18a7132123d6f941"},"bundle_signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"AiNqkzCiP7/YfHbP+GogeR3rSFqf0DfCXXwWYgzxao07HxQeVetT2ZzfoWvMZy9+5fB5L8wI8G+xOlhDjUn/BQ==","signed_message":"bundle_sha256_bytes","signed_at":"2026-05-24T12:15:05.718755Z","bundle_sha256":"79901f986facc9a9a1fb952182a71206c06aca1ce44715051834007ed0310712"}}