{"record_type":"pith_number_record","schema_url":"https://pith.science/schemas/pith-number/v1.json","pith_number":"pith:2024:AWHZJDCOGCSEXBT2NADWU4645Z","short_pith_number":"pith:AWHZJDCO","schema_version":"1.0","canonical_sha256":"058f948c4e30a44b867a68076a73dcee4dd6cdad2c793199902709ec55989b42","source":{"kind":"arxiv","id":"2412.11084","version":1},"attestation_state":"computed","paper":{"title":"BarcodeMamba: State Space Models for Biodiversity Analysis","license":"http://creativecommons.org/licenses/by/4.0/","headline":"","cross_cats":["q-bio.GN","q-bio.QM"],"primary_cat":"cs.LG","authors_text":"Graham W. Taylor, Tiancheng Gao","submitted_at":"2024-12-15T06:52:18Z","abstract_excerpt":"DNA barcodes are crucial in biodiversity analysis for building automatic identification systems that recognize known species and discover unseen species. Unlike human genome modeling, barcode-based invertebrate identification poses challenges in the vast diversity of species and taxonomic complexity. Among Transformer-based foundation models, BarcodeBERT excelled in species-level identification of invertebrates, highlighting the effectiveness of self-supervised pretraining on barcode-specific datasets. Recently, structured state space models (SSMs) have emerged, with a time complexity that sca"},"verification_status":{"content_addressed":true,"pith_receipt":true,"author_attested":false,"weak_author_claims":0,"strong_author_claims":0,"externally_anchored":false,"storage_verified":false,"citation_signatures":0,"replication_records":0,"graph_snapshot":true,"references_resolved":false,"formal_links_present":false},"canonical_record":{"source":{"id":"2412.11084","kind":"arxiv","version":1},"metadata":{"license":"http://creativecommons.org/licenses/by/4.0/","primary_cat":"cs.LG","submitted_at":"2024-12-15T06:52:18Z","cross_cats_sorted":["q-bio.GN","q-bio.QM"],"title_canon_sha256":"8164ac21e118817e0dd66c74f5b960204bdae41bfcdb8e6e07b885c87a4732ee","abstract_canon_sha256":"c153396bfa06c249cca1d99e25c47abb38d10064aa60ca16d4f05b7725bbc2a4"},"schema_version":"1.0"},"receipt":{"kind":"pith_receipt","key_id":"pith-v1-2026-05","algorithm":"ed25519","signed_at":"2026-07-05T09:49:27.281737Z","signature_b64":"06/y4fkKWVMzZhI5lBKI1W8aIL6ZfFh03Yvr2cqSP4hYyi6b70JHCOOaFaiSkol3SXB9JFqt9z9B006OY7LLDw==","signed_message":"canonical_sha256_bytes","builder_version":"pith-number-builder-2026-05-17-v1","receipt_version":"0.3","canonical_sha256":"058f948c4e30a44b867a68076a73dcee4dd6cdad2c793199902709ec55989b42","last_reissued_at":"2026-07-05T09:49:27.281277Z","signature_status":"signed_v1","first_computed_at":"2026-07-05T09:49:27.281277Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"graph_snapshot":{"paper":{"title":"BarcodeMamba: State Space Models for Biodiversity Analysis","license":"http://creativecommons.org/licenses/by/4.0/","headline":"","cross_cats":["q-bio.GN","q-bio.QM"],"primary_cat":"cs.LG","authors_text":"Graham W. Taylor, Tiancheng Gao","submitted_at":"2024-12-15T06:52:18Z","abstract_excerpt":"DNA barcodes are crucial in biodiversity analysis for building automatic identification systems that recognize known species and discover unseen species. Unlike human genome modeling, barcode-based invertebrate identification poses challenges in the vast diversity of species and taxonomic complexity. Among Transformer-based foundation models, BarcodeBERT excelled in species-level identification of invertebrates, highlighting the effectiveness of self-supervised pretraining on barcode-specific datasets. Recently, structured state space models (SSMs) have emerged, with a time complexity that sca"},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"2412.11084","kind":"arxiv","version":1},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"integrity":{"clean":true,"summary":{"advisory":0,"critical":0,"by_detector":{},"informational":0},"endpoint":"/pith/2412.11084/integrity.json","findings":[],"available":true,"detectors_run":[],"snapshot_sha256":"c28c3603d3b5d939e8dc4c7e95fa8dfce3d595e45f758748cecf8e644a296938"},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"},"aliases":[{"alias_kind":"arxiv","alias_value":"2412.11084","created_at":"2026-07-05T09:49:27.281337+00:00"},{"alias_kind":"arxiv_version","alias_value":"2412.11084v1","created_at":"2026-07-05T09:49:27.281337+00:00"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.2412.11084","created_at":"2026-07-05T09:49:27.281337+00:00"},{"alias_kind":"pith_short_12","alias_value":"AWHZJDCOGCSE","created_at":"2026-07-05T09:49:27.281337+00:00"},{"alias_kind":"pith_short_16","alias_value":"AWHZJDCOGCSEXBT2","created_at":"2026-07-05T09:49:27.281337+00:00"},{"alias_kind":"pith_short_8","alias_value":"AWHZJDCO","created_at":"2026-07-05T09:49:27.281337+00:00"}],"events":[],"event_summary":{},"paper_claims":[],"inbound_citations":{"count":0,"internal_anchor_count":0,"sample":[]},"formal_canon":{"evidence_count":0,"sample":[],"anchors":[]},"links":{"html":"https://pith.science/pith/AWHZJDCOGCSEXBT2NADWU4645Z","json":"https://pith.science/pith/AWHZJDCOGCSEXBT2NADWU4645Z.json","graph_json":"https://pith.science/api/pith-number/AWHZJDCOGCSEXBT2NADWU4645Z/graph.json","events_json":"https://pith.science/api/pith-number/AWHZJDCOGCSEXBT2NADWU4645Z/events.json","paper":"https://pith.science/paper/AWHZJDCO"},"agent_actions":{"view_html":"https://pith.science/pith/AWHZJDCOGCSEXBT2NADWU4645Z","download_json":"https://pith.science/pith/AWHZJDCOGCSEXBT2NADWU4645Z.json","view_paper":"https://pith.science/paper/AWHZJDCO","resolve_alias":"https://pith.science/api/pith-number/resolve?arxiv=2412.11084&json=true","fetch_graph":"https://pith.science/api/pith-number/AWHZJDCOGCSEXBT2NADWU4645Z/graph.json","fetch_events":"https://pith.science/api/pith-number/AWHZJDCOGCSEXBT2NADWU4645Z/events.json","actions":{"anchor_timestamp":"https://pith.science/pith/AWHZJDCOGCSEXBT2NADWU4645Z/action/timestamp_anchor","attest_storage":"https://pith.science/pith/AWHZJDCOGCSEXBT2NADWU4645Z/action/storage_attestation","attest_author":"https://pith.science/pith/AWHZJDCOGCSEXBT2NADWU4645Z/action/author_attestation","sign_citation":"https://pith.science/pith/AWHZJDCOGCSEXBT2NADWU4645Z/action/citation_signature","submit_replication":"https://pith.science/pith/AWHZJDCOGCSEXBT2NADWU4645Z/action/replication_record"}},"created_at":"2026-07-05T09:49:27.281337+00:00","updated_at":"2026-07-05T09:49:27.281337+00:00"}