{"bundle_type":"pith_open_graph_bundle","bundle_version":"1.0","pith_number":"pith:2023:BLXJ4HLFCSTQ43RLV3JHHQIBQ2","short_pith_number":"pith:BLXJ4HLF","canonical_record":{"source":{"id":"2310.16908","kind":"arxiv","version":5},"metadata":{"license":"http://creativecommons.org/licenses/by-sa/4.0/","primary_cat":"q-bio.GN","submitted_at":"2023-10-25T18:17:46Z","cross_cats_sorted":["cs.AR","q-bio.QM"],"title_canon_sha256":"61bac636b477726d8687a63881608829274b4f4caa84693a0bcae647d2038243","abstract_canon_sha256":"16275aa3f86cf41436d15cbad6335d223867c60ebfcfe050b069b70c20b072fe"},"schema_version":"1.0"},"canonical_sha256":"0aee9e1d6514a70e6e2baed273c10186aa0921db56d267d02b46a5b215cb2083","source":{"kind":"arxiv","id":"2310.16908","version":5},"source_aliases":[{"alias_kind":"arxiv","alias_value":"2310.16908","created_at":"2026-07-05T10:04:10Z"},{"alias_kind":"arxiv_version","alias_value":"2310.16908v5","created_at":"2026-07-05T10:04:10Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.2310.16908","created_at":"2026-07-05T10:04:10Z"},{"alias_kind":"pith_short_12","alias_value":"BLXJ4HLFCSTQ","created_at":"2026-07-05T10:04:10Z"},{"alias_kind":"pith_short_16","alias_value":"BLXJ4HLFCSTQ43RL","created_at":"2026-07-05T10:04:10Z"},{"alias_kind":"pith_short_8","alias_value":"BLXJ4HLF","created_at":"2026-07-05T10:04:10Z"}],"events":[{"event_type":"record_created","subject_pith_number":"pith:2023:BLXJ4HLFCSTQ43RLV3JHHQIBQ2","target":"record","payload":{"canonical_record":{"source":{"id":"2310.16908","kind":"arxiv","version":5},"metadata":{"license":"http://creativecommons.org/licenses/by-sa/4.0/","primary_cat":"q-bio.GN","submitted_at":"2023-10-25T18:17:46Z","cross_cats_sorted":["cs.AR","q-bio.QM"],"title_canon_sha256":"61bac636b477726d8687a63881608829274b4f4caa84693a0bcae647d2038243","abstract_canon_sha256":"16275aa3f86cf41436d15cbad6335d223867c60ebfcfe050b069b70c20b072fe"},"schema_version":"1.0"},"canonical_sha256":"0aee9e1d6514a70e6e2baed273c10186aa0921db56d267d02b46a5b215cb2083","receipt":{"kind":"pith_receipt","key_id":"pith-v1-2026-05","algorithm":"ed25519","signed_at":"2026-07-05T10:04:10.629136Z","signature_b64":"MxG1TPWqS0oGTZbFFQSrjPON9b1YXrz7yf2C6glhiTzK7xxYRLnPf13KkS0L9P5QKf+EEnOypkwNoLQRcougAQ==","signed_message":"canonical_sha256_bytes","builder_version":"pith-number-builder-2026-05-17-v1","receipt_version":"0.3","canonical_sha256":"0aee9e1d6514a70e6e2baed273c10186aa0921db56d267d02b46a5b215cb2083","last_reissued_at":"2026-07-05T10:04:10.628543Z","signature_status":"signed_v1","first_computed_at":"2026-07-05T10:04:10.628543Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"source_kind":"arxiv","source_id":"2310.16908","source_version":5,"attestation_state":"computed"},"signer":{"signer_id":"pith.science","signer_type":"pith_registry","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"created_at":"2026-07-05T10:04:10Z","supersedes":[],"prev_event":null,"signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"Cr+mwo8KQ6B1yjPZHRV9VVljpDRwtzYHecScy6hJN1vr3xCKZcqn+S8tcdEF95Blz46tdJLZKHqeC7VabtblAQ==","signed_message":"open_graph_event_sha256_bytes","signed_at":"2026-07-17T09:04:20.938208Z"},"content_sha256":"d9664bb068c6ddfe2be8386851c22fbc28e07d1930c2caf0c133c06a9eda9470","schema_version":"1.0","event_id":"sha256:d9664bb068c6ddfe2be8386851c22fbc28e07d1930c2caf0c133c06a9eda9470"},{"event_type":"graph_snapshot","subject_pith_number":"pith:2023:BLXJ4HLFCSTQ43RLV3JHHQIBQ2","target":"graph","payload":{"graph_snapshot":{"paper":{"title":"SequenceLab: A Comprehensive Benchmark of Computational Methods for Comparing Genomic Sequences","license":"http://creativecommons.org/licenses/by-sa/4.0/","headline":"","cross_cats":["cs.AR","q-bio.QM"],"primary_cat":"q-bio.GN","authors_text":"Arvid E. Gollwitzer, Can Firtina, Joel Lindegger, Maximilian-David Rumpf, Mohammed Alser, Nour Almadhoun, Onur Mutlu, Serghei Mangul","submitted_at":"2023-10-25T18:17:46Z","abstract_excerpt":"Computational complexity is a key limitation of genomic analyses. Thus, over the last 30 years, researchers have proposed numerous fast heuristic methods that provide computational relief. Comparing genomic sequences is one of the most fundamental computational steps in most genomic analyses. Due to its high computational complexity, optimized exact and heuristic algorithms are still being developed. We find that these methods are highly sensitive to the underlying data, its quality, and various hyperparameters. Despite their wide use, no in-depth analysis has been performed, potentially false"},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"2310.16908","kind":"arxiv","version":5},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"integrity":{"clean":true,"summary":{"advisory":0,"critical":0,"by_detector":{},"informational":0},"endpoint":"/pith/2310.16908/integrity.json","findings":[],"available":true,"detectors_run":[],"snapshot_sha256":"c28c3603d3b5d939e8dc4c7e95fa8dfce3d595e45f758748cecf8e644a296938"},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"},"verdict_id":null},"signer":{"signer_id":"pith.science","signer_type":"pith_registry","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"created_at":"2026-07-05T10:04:10Z","supersedes":[],"prev_event":null,"signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"JgJ0HEveEzkb1PZuTTg4RI5n8Q2sIlZUOb1KL8susoqHdBGVJKu1iI8medGuD/0mzSKSuWiOwgObXfFY56aGCg==","signed_message":"open_graph_event_sha256_bytes","signed_at":"2026-07-17T09:04:20.938594Z"},"content_sha256":"dcf52e1b4e26717808e0fafa77521c9fd91a5bc528e5aa5557342996fa9291ce","schema_version":"1.0","event_id":"sha256:dcf52e1b4e26717808e0fafa77521c9fd91a5bc528e5aa5557342996fa9291ce"}],"timestamp_proofs":[],"mirror_hints":[{"mirror_type":"https","name":"Pith Resolver","base_url":"https://pith.science","bundle_url":"https://pith.science/pith/BLXJ4HLFCSTQ43RLV3JHHQIBQ2/bundle.json","state_url":"https://pith.science/pith/BLXJ4HLFCSTQ43RLV3JHHQIBQ2/state.json","well_known_bundle_url":"https://pith.science/.well-known/pith/BLXJ4HLFCSTQ43RLV3JHHQIBQ2/bundle.json","status":"primary"}],"public_keys":[{"key_id":"pith-v1-2026-05","algorithm":"ed25519","format":"raw","public_key_b64":"stVStoiQhXFxp4s2pdzPNoqVNBMojDU/fJ2db5S3CbM=","public_key_hex":"b2d552b68890857171a78b36a5dccf368a953413288c353f7c9d9d6f94b709b3","fingerprint_sha256_b32_first128bits":"RVFV5Z2OI2J3ZUO7ERDEBCYNKS","fingerprint_sha256_hex":"8d4b5ee74e4693bcd1df2446408b0d54","rotates_at":null,"url":"https://pith.science/pith-signing-key.json","notes":"Pith uses this Ed25519 key to sign canonical record SHA-256 digests. Verify with: ed25519_verify(public_key, message=canonical_sha256_bytes, signature=base64decode(signature_b64))."}],"merge_version":"pith-open-graph-merge-v1","built_at":"2026-07-17T09:04:20Z","links":{"resolver":"https://pith.science/pith/BLXJ4HLFCSTQ43RLV3JHHQIBQ2","bundle":"https://pith.science/pith/BLXJ4HLFCSTQ43RLV3JHHQIBQ2/bundle.json","state":"https://pith.science/pith/BLXJ4HLFCSTQ43RLV3JHHQIBQ2/state.json","well_known_bundle":"https://pith.science/.well-known/pith/BLXJ4HLFCSTQ43RLV3JHHQIBQ2/bundle.json"},"state":{"state_type":"pith_open_graph_state","state_version":"1.0","pith_number":"pith:2023:BLXJ4HLFCSTQ43RLV3JHHQIBQ2","merge_version":"pith-open-graph-merge-v1","event_count":2,"valid_event_count":2,"invalid_event_count":0,"equivocation_count":0,"current":{"canonical_record":{"metadata":{"abstract_canon_sha256":"16275aa3f86cf41436d15cbad6335d223867c60ebfcfe050b069b70c20b072fe","cross_cats_sorted":["cs.AR","q-bio.QM"],"license":"http://creativecommons.org/licenses/by-sa/4.0/","primary_cat":"q-bio.GN","submitted_at":"2023-10-25T18:17:46Z","title_canon_sha256":"61bac636b477726d8687a63881608829274b4f4caa84693a0bcae647d2038243"},"schema_version":"1.0","source":{"id":"2310.16908","kind":"arxiv","version":5}},"source_aliases":[{"alias_kind":"arxiv","alias_value":"2310.16908","created_at":"2026-07-05T10:04:10Z"},{"alias_kind":"arxiv_version","alias_value":"2310.16908v5","created_at":"2026-07-05T10:04:10Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.2310.16908","created_at":"2026-07-05T10:04:10Z"},{"alias_kind":"pith_short_12","alias_value":"BLXJ4HLFCSTQ","created_at":"2026-07-05T10:04:10Z"},{"alias_kind":"pith_short_16","alias_value":"BLXJ4HLFCSTQ43RL","created_at":"2026-07-05T10:04:10Z"},{"alias_kind":"pith_short_8","alias_value":"BLXJ4HLF","created_at":"2026-07-05T10:04:10Z"}],"graph_snapshots":[{"event_id":"sha256:dcf52e1b4e26717808e0fafa77521c9fd91a5bc528e5aa5557342996fa9291ce","target":"graph","created_at":"2026-07-05T10:04:10Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"graph_snapshot":{"author_claims":{"count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","strong_count":0},"builder_version":"pith-number-builder-2026-05-17-v1","claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"integrity":{"available":true,"clean":true,"detectors_run":[],"endpoint":"/pith/2310.16908/integrity.json","findings":[],"snapshot_sha256":"c28c3603d3b5d939e8dc4c7e95fa8dfce3d595e45f758748cecf8e644a296938","summary":{"advisory":0,"by_detector":{},"critical":0,"informational":0}},"paper":{"abstract_excerpt":"Computational complexity is a key limitation of genomic analyses. Thus, over the last 30 years, researchers have proposed numerous fast heuristic methods that provide computational relief. Comparing genomic sequences is one of the most fundamental computational steps in most genomic analyses. Due to its high computational complexity, optimized exact and heuristic algorithms are still being developed. We find that these methods are highly sensitive to the underlying data, its quality, and various hyperparameters. Despite their wide use, no in-depth analysis has been performed, potentially false","authors_text":"Arvid E. Gollwitzer, Can Firtina, Joel Lindegger, Maximilian-David Rumpf, Mohammed Alser, Nour Almadhoun, Onur Mutlu, Serghei Mangul","cross_cats":["cs.AR","q-bio.QM"],"headline":"","license":"http://creativecommons.org/licenses/by-sa/4.0/","primary_cat":"q-bio.GN","submitted_at":"2023-10-25T18:17:46Z","title":"SequenceLab: A Comprehensive Benchmark of Computational Methods for Comparing Genomic Sequences"},"references":{"count":0,"internal_anchors":0,"resolved_work":0,"sample":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"2310.16908","kind":"arxiv","version":5},"verdict":{"created_at":null,"id":null,"model_set":{},"one_line_summary":"","pipeline_version":null,"pith_extraction_headline":"","strongest_claim":"","weakest_assumption":""}},"verdict_id":null}}],"author_attestations":[],"timestamp_anchors":[],"storage_attestations":[],"citation_signatures":[],"replication_records":[],"corrections":[],"mirror_hints":[],"record_created":{"event_id":"sha256:d9664bb068c6ddfe2be8386851c22fbc28e07d1930c2caf0c133c06a9eda9470","target":"record","created_at":"2026-07-05T10:04:10Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"attestation_state":"computed","canonical_record":{"metadata":{"abstract_canon_sha256":"16275aa3f86cf41436d15cbad6335d223867c60ebfcfe050b069b70c20b072fe","cross_cats_sorted":["cs.AR","q-bio.QM"],"license":"http://creativecommons.org/licenses/by-sa/4.0/","primary_cat":"q-bio.GN","submitted_at":"2023-10-25T18:17:46Z","title_canon_sha256":"61bac636b477726d8687a63881608829274b4f4caa84693a0bcae647d2038243"},"schema_version":"1.0","source":{"id":"2310.16908","kind":"arxiv","version":5}},"canonical_sha256":"0aee9e1d6514a70e6e2baed273c10186aa0921db56d267d02b46a5b215cb2083","receipt":{"algorithm":"ed25519","builder_version":"pith-number-builder-2026-05-17-v1","canonical_sha256":"0aee9e1d6514a70e6e2baed273c10186aa0921db56d267d02b46a5b215cb2083","first_computed_at":"2026-07-05T10:04:10.628543Z","key_id":"pith-v1-2026-05","kind":"pith_receipt","last_reissued_at":"2026-07-05T10:04:10.628543Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","receipt_version":"0.3","signature_b64":"MxG1TPWqS0oGTZbFFQSrjPON9b1YXrz7yf2C6glhiTzK7xxYRLnPf13KkS0L9P5QKf+EEnOypkwNoLQRcougAQ==","signature_status":"signed_v1","signed_at":"2026-07-05T10:04:10.629136Z","signed_message":"canonical_sha256_bytes"},"source_id":"2310.16908","source_kind":"arxiv","source_version":5}}},"equivocations":[],"invalid_events":[],"applied_event_ids":["sha256:d9664bb068c6ddfe2be8386851c22fbc28e07d1930c2caf0c133c06a9eda9470","sha256:dcf52e1b4e26717808e0fafa77521c9fd91a5bc528e5aa5557342996fa9291ce"],"state_sha256":"03a6def39da4a3bd54090d7df234a567a2482b86f44e0de38384e6b4e918de17"},"bundle_signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"AIUnX4mDbxz23cXF/jz5capZPl4V64isjvYtVDKdmGmW0dUZuvpeZeYbbj31pPBZhAfLEU58qgUhnyuR2+QuBQ==","signed_message":"bundle_sha256_bytes","signed_at":"2026-07-17T09:04:20.941189Z","bundle_sha256":"697bb74b4d456dbd37dc14719fde016a51e1ef169605a49ac9fae202fa64c91b"}}