{"state_type":"pith_open_graph_state","state_version":"1.0","pith_number":"pith:2015:BSNKDAV5VLIYURPUB4R7GU7DDB","merge_version":"pith-open-graph-merge-v1","event_count":2,"valid_event_count":2,"invalid_event_count":0,"equivocation_count":0,"current":{"canonical_record":{"metadata":{"abstract_canon_sha256":"0af59ca34db3f2ce8722e1c0113b629c4ef84aefc2d185d37015d974f29c7ad3","cross_cats_sorted":[],"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"physics.chem-ph","submitted_at":"2015-05-20T09:03:23Z","title_canon_sha256":"e748237beb55d73dc5195e2e358dceb5b852ee4af491b4a7a59fad3b80d45838"},"schema_version":"1.0","source":{"id":"1505.05287","kind":"arxiv","version":2}},"source_aliases":[{"alias_kind":"arxiv","alias_value":"1505.05287","created_at":"2026-05-18T01:31:10Z"},{"alias_kind":"arxiv_version","alias_value":"1505.05287v2","created_at":"2026-05-18T01:31:10Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.1505.05287","created_at":"2026-05-18T01:31:10Z"},{"alias_kind":"pith_short_12","alias_value":"BSNKDAV5VLIY","created_at":"2026-05-18T12:29:14Z"},{"alias_kind":"pith_short_16","alias_value":"BSNKDAV5VLIYURPU","created_at":"2026-05-18T12:29:14Z"},{"alias_kind":"pith_short_8","alias_value":"BSNKDAV5","created_at":"2026-05-18T12:29:14Z"}],"graph_snapshots":[{"event_id":"sha256:91f3e652c9f4af93c9a2221436fe36c60f4e3ec14659c0927557064819f7cc73","target":"graph","created_at":"2026-05-18T01:31:10Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"graph_snapshot":{"author_claims":{"count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","strong_count":0},"builder_version":"pith-number-builder-2026-05-17-v1","claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"paper":{"abstract_excerpt":"It is important to extract reaction coordinates or order parameters from protein simulations in order to investigate the local minimum-energy states and the transitions between them. The most popular method to obtain such data is principal component analysis, which extracts modes of large conformational fluctuations around an average structure. We recently applied relaxation mode analysis for protein systems, which approximately estimates the slow relaxation modes and times from a simulation and enables investigations of the dynamic properties underlying the structural fluctuations of proteins","authors_text":"Ayori Mitsutake, Hiroshi Takano","cross_cats":[],"headline":"","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"physics.chem-ph","submitted_at":"2015-05-20T09:03:23Z","title":"Relaxation Mode Analysis and Markov State Relaxation Mode Analysis for Chignolin in Aqueous Solution near a Transition Temperature"},"references":{"count":0,"internal_anchors":0,"resolved_work":0,"sample":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"1505.05287","kind":"arxiv","version":2},"verdict":{"created_at":null,"id":null,"model_set":{},"one_line_summary":"","pipeline_version":null,"pith_extraction_headline":"","strongest_claim":"","weakest_assumption":""}},"verdict_id":null}}],"author_attestations":[],"timestamp_anchors":[],"storage_attestations":[],"citation_signatures":[],"replication_records":[],"corrections":[],"mirror_hints":[],"record_created":{"event_id":"sha256:42ed075e813075f98722dd5e45a910a9edc1d1f903549e0fa7d65e8e724034a7","target":"record","created_at":"2026-05-18T01:31:10Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"attestation_state":"computed","canonical_record":{"metadata":{"abstract_canon_sha256":"0af59ca34db3f2ce8722e1c0113b629c4ef84aefc2d185d37015d974f29c7ad3","cross_cats_sorted":[],"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"physics.chem-ph","submitted_at":"2015-05-20T09:03:23Z","title_canon_sha256":"e748237beb55d73dc5195e2e358dceb5b852ee4af491b4a7a59fad3b80d45838"},"schema_version":"1.0","source":{"id":"1505.05287","kind":"arxiv","version":2}},"canonical_sha256":"0c9aa182bdaad18a45f40f23f353e318534799f2b85e7f22d177f6554bc9015a","receipt":{"algorithm":"ed25519","builder_version":"pith-number-builder-2026-05-17-v1","canonical_sha256":"0c9aa182bdaad18a45f40f23f353e318534799f2b85e7f22d177f6554bc9015a","first_computed_at":"2026-05-18T01:31:10.932712Z","key_id":"pith-v1-2026-05","kind":"pith_receipt","last_reissued_at":"2026-05-18T01:31:10.932712Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","receipt_version":"0.3","signature_b64":"AWERbD+AycG5fesrzY4IA4S7qPH6sLWV/QJSwdrq6g8y4kwUWRklhQySrd603cUCOyBklYVJ9Il7+DptZKVDAg==","signature_status":"signed_v1","signed_at":"2026-05-18T01:31:10.933211Z","signed_message":"canonical_sha256_bytes"},"source_id":"1505.05287","source_kind":"arxiv","source_version":2}}},"equivocations":[],"invalid_events":[],"applied_event_ids":["sha256:42ed075e813075f98722dd5e45a910a9edc1d1f903549e0fa7d65e8e724034a7","sha256:91f3e652c9f4af93c9a2221436fe36c60f4e3ec14659c0927557064819f7cc73"],"state_sha256":"368c89af97032ec3a43cde7c384685155a367d7c6dfbc7f9aea440a5dbd84dfc"}