{"record_type":"pith_number_record","schema_url":"https://pith.science/schemas/pith-number/v1.json","pith_number":"pith:2013:F2MVLZ4T5QNEV3BCCNZFK7WHP3","short_pith_number":"pith:F2MVLZ4T","schema_version":"1.0","canonical_sha256":"2e9955e793ec1a4aec221372557ec77edfbf9cf50a1f7b5437432fd0115877c3","source":{"kind":"arxiv","id":"1307.4291","version":1},"attestation_state":"computed","paper":{"title":"Synteny in Bacterial Genomes: Inference, Organization and Evolution","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","headline":"","cross_cats":[],"primary_cat":"q-bio.GN","authors_text":"Ivan Junier, Olivier Rivoire","submitted_at":"2013-07-16T14:41:59Z","abstract_excerpt":"Genes are not located randomly along genomes. Synteny, the conservation of their relative positions in genomes of different species, reflects fundamental constraints on natural evolution. We present approaches to infer pairs of co-localized genes from multiple genomes, describe their organization, and study their evolutionary history. In bacterial genomes, we thus identify synteny units, or \"syntons\", which are clusters of proximal genes that encompass and extend operons. The size distribution of these syntons divide them into large syntons, which correspond to fundamental macro-molecular comp"},"verification_status":{"content_addressed":true,"pith_receipt":true,"author_attested":false,"weak_author_claims":0,"strong_author_claims":0,"externally_anchored":false,"storage_verified":false,"citation_signatures":0,"replication_records":0,"graph_snapshot":true,"references_resolved":false,"formal_links_present":false},"canonical_record":{"source":{"id":"1307.4291","kind":"arxiv","version":1},"metadata":{"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.GN","submitted_at":"2013-07-16T14:41:59Z","cross_cats_sorted":[],"title_canon_sha256":"67570faafddbc58ddea825f671c7c47d09ea8794720befc8006580b91ddfdde4","abstract_canon_sha256":"60ee57783f2023ebf3cb044830e3ca78e1b5255a4684a3ce1df12b358859b2c8"},"schema_version":"1.0"},"receipt":{"kind":"pith_receipt","key_id":"pith-v1-2026-05","algorithm":"ed25519","signed_at":"2026-05-18T03:18:19.213058Z","signature_b64":"/QsQARwZTWOwgj6U3nRY0aXSTv4aH2gJOShdEpTE5T0gsuLYCTWhJWOdF8t4YMLMaOxXI387s6kqXsGmRsA3DQ==","signed_message":"canonical_sha256_bytes","builder_version":"pith-number-builder-2026-05-17-v1","receipt_version":"0.3","canonical_sha256":"2e9955e793ec1a4aec221372557ec77edfbf9cf50a1f7b5437432fd0115877c3","last_reissued_at":"2026-05-18T03:18:19.212588Z","signature_status":"signed_v1","first_computed_at":"2026-05-18T03:18:19.212588Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"graph_snapshot":{"paper":{"title":"Synteny in Bacterial Genomes: Inference, Organization and Evolution","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","headline":"","cross_cats":[],"primary_cat":"q-bio.GN","authors_text":"Ivan Junier, Olivier Rivoire","submitted_at":"2013-07-16T14:41:59Z","abstract_excerpt":"Genes are not located randomly along genomes. Synteny, the conservation of their relative positions in genomes of different species, reflects fundamental constraints on natural evolution. We present approaches to infer pairs of co-localized genes from multiple genomes, describe their organization, and study their evolutionary history. In bacterial genomes, we thus identify synteny units, or \"syntons\", which are clusters of proximal genes that encompass and extend operons. The size distribution of these syntons divide them into large syntons, which correspond to fundamental macro-molecular comp"},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"1307.4291","kind":"arxiv","version":1},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"},"aliases":[{"alias_kind":"arxiv","alias_value":"1307.4291","created_at":"2026-05-18T03:18:19.212655+00:00"},{"alias_kind":"arxiv_version","alias_value":"1307.4291v1","created_at":"2026-05-18T03:18:19.212655+00:00"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.1307.4291","created_at":"2026-05-18T03:18:19.212655+00:00"},{"alias_kind":"pith_short_12","alias_value":"F2MVLZ4T5QNE","created_at":"2026-05-18T12:27:43.054852+00:00"},{"alias_kind":"pith_short_16","alias_value":"F2MVLZ4T5QNEV3BC","created_at":"2026-05-18T12:27:43.054852+00:00"},{"alias_kind":"pith_short_8","alias_value":"F2MVLZ4T","created_at":"2026-05-18T12:27:43.054852+00:00"}],"events":[],"event_summary":{},"paper_claims":[],"inbound_citations":{"count":0,"internal_anchor_count":0,"sample":[]},"formal_canon":{"evidence_count":0,"sample":[],"anchors":[]},"links":{"html":"https://pith.science/pith/F2MVLZ4T5QNEV3BCCNZFK7WHP3","json":"https://pith.science/pith/F2MVLZ4T5QNEV3BCCNZFK7WHP3.json","graph_json":"https://pith.science/api/pith-number/F2MVLZ4T5QNEV3BCCNZFK7WHP3/graph.json","events_json":"https://pith.science/api/pith-number/F2MVLZ4T5QNEV3BCCNZFK7WHP3/events.json","paper":"https://pith.science/paper/F2MVLZ4T"},"agent_actions":{"view_html":"https://pith.science/pith/F2MVLZ4T5QNEV3BCCNZFK7WHP3","download_json":"https://pith.science/pith/F2MVLZ4T5QNEV3BCCNZFK7WHP3.json","view_paper":"https://pith.science/paper/F2MVLZ4T","resolve_alias":"https://pith.science/api/pith-number/resolve?arxiv=1307.4291&json=true","fetch_graph":"https://pith.science/api/pith-number/F2MVLZ4T5QNEV3BCCNZFK7WHP3/graph.json","fetch_events":"https://pith.science/api/pith-number/F2MVLZ4T5QNEV3BCCNZFK7WHP3/events.json","actions":{"anchor_timestamp":"https://pith.science/pith/F2MVLZ4T5QNEV3BCCNZFK7WHP3/action/timestamp_anchor","attest_storage":"https://pith.science/pith/F2MVLZ4T5QNEV3BCCNZFK7WHP3/action/storage_attestation","attest_author":"https://pith.science/pith/F2MVLZ4T5QNEV3BCCNZFK7WHP3/action/author_attestation","sign_citation":"https://pith.science/pith/F2MVLZ4T5QNEV3BCCNZFK7WHP3/action/citation_signature","submit_replication":"https://pith.science/pith/F2MVLZ4T5QNEV3BCCNZFK7WHP3/action/replication_record"}},"created_at":"2026-05-18T03:18:19.212655+00:00","updated_at":"2026-05-18T03:18:19.212655+00:00"}