{"state_type":"pith_open_graph_state","state_version":"1.0","pith_number":"pith:2013:FZSGG5B7HEXA5XHCK2NI6TW3BL","merge_version":"pith-open-graph-merge-v1","event_count":2,"valid_event_count":2,"invalid_event_count":0,"equivocation_count":0,"current":{"canonical_record":{"metadata":{"abstract_canon_sha256":"3d70066513fcc4ed47306384d80853b232a0b4ea58ea96f0766d24d6ea721bdd","cross_cats_sorted":[],"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.GN","submitted_at":"2013-03-16T17:20:52Z","title_canon_sha256":"7c689729723ea7fa5b163ad771d77b020e47871f3a42cd89a71a3d00eb011a29"},"schema_version":"1.0","source":{"id":"1303.3997","kind":"arxiv","version":2}},"source_aliases":[{"alias_kind":"arxiv","alias_value":"1303.3997","created_at":"2026-05-18T03:24:53Z"},{"alias_kind":"arxiv_version","alias_value":"1303.3997v2","created_at":"2026-05-18T03:24:53Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.1303.3997","created_at":"2026-05-18T03:24:53Z"},{"alias_kind":"pith_short_12","alias_value":"FZSGG5B7HEXA","created_at":"2026-05-18T12:27:45Z"},{"alias_kind":"pith_short_16","alias_value":"FZSGG5B7HEXA5XHC","created_at":"2026-05-18T12:27:45Z"},{"alias_kind":"pith_short_8","alias_value":"FZSGG5B7","created_at":"2026-05-18T12:27:45Z"}],"graph_snapshots":[{"event_id":"sha256:5671b8f0662e41aad061b98d3e2af5ba8dfe2795087417ab2de0b973cfefcfd0","target":"graph","created_at":"2026-05-18T03:24:53Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"graph_snapshot":{"author_claims":{"count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","strong_count":0},"builder_version":"pith-number-builder-2026-05-17-v1","claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"paper":{"abstract_excerpt":"Summary: BWA-MEM is a new alignment algorithm for aligning sequence reads or long query sequences against a large reference genome such as human. It automatically chooses between local and end-to-end alignments, supports paired-end reads and performs chimeric alignment. The algorithm is robust to sequencing errors and applicable to a wide range of sequence lengths from 70bp to a few megabases. For mapping 100bp sequences, BWA-MEM shows better performance than several state-of-art read aligners to date.\n  Availability and implementation: BWA-MEM is implemented as a component of BWA, which is av","authors_text":"Heng Li","cross_cats":[],"headline":"","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.GN","submitted_at":"2013-03-16T17:20:52Z","title":"Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM"},"references":{"count":0,"internal_anchors":0,"resolved_work":0,"sample":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"1303.3997","kind":"arxiv","version":2},"verdict":{"created_at":null,"id":null,"model_set":{},"one_line_summary":"","pipeline_version":null,"pith_extraction_headline":"","strongest_claim":"","weakest_assumption":""}},"verdict_id":null}}],"author_attestations":[],"timestamp_anchors":[],"storage_attestations":[],"citation_signatures":[],"replication_records":[],"corrections":[],"mirror_hints":[],"record_created":{"event_id":"sha256:1e31e63a86952929d65f8bad9918e66632c5a7643c760e0f2c8fa00a84c2cd3a","target":"record","created_at":"2026-05-18T03:24:53Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"attestation_state":"computed","canonical_record":{"metadata":{"abstract_canon_sha256":"3d70066513fcc4ed47306384d80853b232a0b4ea58ea96f0766d24d6ea721bdd","cross_cats_sorted":[],"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.GN","submitted_at":"2013-03-16T17:20:52Z","title_canon_sha256":"7c689729723ea7fa5b163ad771d77b020e47871f3a42cd89a71a3d00eb011a29"},"schema_version":"1.0","source":{"id":"1303.3997","kind":"arxiv","version":2}},"canonical_sha256":"2e6463743f392e0edce2569a8f4edb0ad98f98611346c2f7fc01981e87e12d4e","receipt":{"algorithm":"ed25519","builder_version":"pith-number-builder-2026-05-17-v1","canonical_sha256":"2e6463743f392e0edce2569a8f4edb0ad98f98611346c2f7fc01981e87e12d4e","first_computed_at":"2026-05-18T03:24:53.729616Z","key_id":"pith-v1-2026-05","kind":"pith_receipt","last_reissued_at":"2026-05-18T03:24:53.729616Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","receipt_version":"0.3","signature_b64":"5o9rCfiOUVc1LwzftgfgnV2YLUoaykYM2qBnQgOMKjnQRgxW5cw/5FiGz+IqBeo8Cr5Zwd9HtT2Nw6NmXRGNDA==","signature_status":"signed_v1","signed_at":"2026-05-18T03:24:53.730222Z","signed_message":"canonical_sha256_bytes"},"source_id":"1303.3997","source_kind":"arxiv","source_version":2}}},"equivocations":[],"invalid_events":[],"applied_event_ids":["sha256:1e31e63a86952929d65f8bad9918e66632c5a7643c760e0f2c8fa00a84c2cd3a","sha256:5671b8f0662e41aad061b98d3e2af5ba8dfe2795087417ab2de0b973cfefcfd0"],"state_sha256":"565d0d25e1e175365889d61ce01c1261eb86c6f11c61e7aa5e16aadf05dca02e"}