{"record_type":"pith_number_record","schema_url":"https://pith.science/schemas/pith-number/v1.json","pith_number":"pith:2016:GK3H2LNKILRAKGY2SZ44TXP5PH","short_pith_number":"pith:GK3H2LNK","schema_version":"1.0","canonical_sha256":"32b67d2daa42e2051b1a9679c9ddfd79e77fbbb3d7905cf4e3f5f977234bc389","source":{"kind":"arxiv","id":"1605.09070","version":1},"attestation_state":"computed","paper":{"title":"Dynamic read mapping and online consensus calling for better variant detection","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","headline":"","cross_cats":[],"primary_cat":"q-bio.GN","authors_text":"Gregory Kucherov, Karel B\\v{r}inda, Valentina Boeva","submitted_at":"2016-05-29T22:25:55Z","abstract_excerpt":"Variant detection from high-throughput sequencing data is an essential step in identification of alleles involved in complex diseases and cancer. To deal with these massive data, elaborated sequence analysis pipelines are employed. A core component of such pipelines is a read mapping module whose accuracy strongly affects the quality of resulting variant calls.\n  We propose a dynamic read mapping approach that significantly improves read alignment accuracy. The general idea of dynamic mapping is to continuously update the reference sequence on the basis of previously computed read alignments. "},"verification_status":{"content_addressed":true,"pith_receipt":true,"author_attested":false,"weak_author_claims":0,"strong_author_claims":0,"externally_anchored":false,"storage_verified":false,"citation_signatures":0,"replication_records":0,"graph_snapshot":true,"references_resolved":false,"formal_links_present":false},"canonical_record":{"source":{"id":"1605.09070","kind":"arxiv","version":1},"metadata":{"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.GN","submitted_at":"2016-05-29T22:25:55Z","cross_cats_sorted":[],"title_canon_sha256":"e9c1564cadaf4c8a42b62f5994dc8a712ccc5d317418d2dda249fc074ef13077","abstract_canon_sha256":"54503762814ece40d35d4ec8a47cfdb5d015a117233815cc268012929cdbefda"},"schema_version":"1.0"},"receipt":{"kind":"pith_receipt","key_id":"pith-v1-2026-05","algorithm":"ed25519","signed_at":"2026-05-18T01:13:22.174839Z","signature_b64":"7Vn9JzqMAaH5SnJdFChyylEVi7NXvkTkT+MCYcIxYSA5UBfq2PrjMOQKi31xi/YOEHU7vGN/MpOl820AvECXBA==","signed_message":"canonical_sha256_bytes","builder_version":"pith-number-builder-2026-05-17-v1","receipt_version":"0.3","canonical_sha256":"32b67d2daa42e2051b1a9679c9ddfd79e77fbbb3d7905cf4e3f5f977234bc389","last_reissued_at":"2026-05-18T01:13:22.174097Z","signature_status":"signed_v1","first_computed_at":"2026-05-18T01:13:22.174097Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"graph_snapshot":{"paper":{"title":"Dynamic read mapping and online consensus calling for better variant detection","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","headline":"","cross_cats":[],"primary_cat":"q-bio.GN","authors_text":"Gregory Kucherov, Karel B\\v{r}inda, Valentina Boeva","submitted_at":"2016-05-29T22:25:55Z","abstract_excerpt":"Variant detection from high-throughput sequencing data is an essential step in identification of alleles involved in complex diseases and cancer. To deal with these massive data, elaborated sequence analysis pipelines are employed. A core component of such pipelines is a read mapping module whose accuracy strongly affects the quality of resulting variant calls.\n  We propose a dynamic read mapping approach that significantly improves read alignment accuracy. The general idea of dynamic mapping is to continuously update the reference sequence on the basis of previously computed read alignments. "},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"1605.09070","kind":"arxiv","version":1},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"},"aliases":[{"alias_kind":"arxiv","alias_value":"1605.09070","created_at":"2026-05-18T01:13:22.174226+00:00"},{"alias_kind":"arxiv_version","alias_value":"1605.09070v1","created_at":"2026-05-18T01:13:22.174226+00:00"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.1605.09070","created_at":"2026-05-18T01:13:22.174226+00:00"},{"alias_kind":"pith_short_12","alias_value":"GK3H2LNKILRA","created_at":"2026-05-18T12:30:19.053100+00:00"},{"alias_kind":"pith_short_16","alias_value":"GK3H2LNKILRAKGY2","created_at":"2026-05-18T12:30:19.053100+00:00"},{"alias_kind":"pith_short_8","alias_value":"GK3H2LNK","created_at":"2026-05-18T12:30:19.053100+00:00"}],"events":[],"event_summary":{},"paper_claims":[],"inbound_citations":{"count":0,"internal_anchor_count":0,"sample":[]},"formal_canon":{"evidence_count":0,"sample":[],"anchors":[]},"links":{"html":"https://pith.science/pith/GK3H2LNKILRAKGY2SZ44TXP5PH","json":"https://pith.science/pith/GK3H2LNKILRAKGY2SZ44TXP5PH.json","graph_json":"https://pith.science/api/pith-number/GK3H2LNKILRAKGY2SZ44TXP5PH/graph.json","events_json":"https://pith.science/api/pith-number/GK3H2LNKILRAKGY2SZ44TXP5PH/events.json","paper":"https://pith.science/paper/GK3H2LNK"},"agent_actions":{"view_html":"https://pith.science/pith/GK3H2LNKILRAKGY2SZ44TXP5PH","download_json":"https://pith.science/pith/GK3H2LNKILRAKGY2SZ44TXP5PH.json","view_paper":"https://pith.science/paper/GK3H2LNK","resolve_alias":"https://pith.science/api/pith-number/resolve?arxiv=1605.09070&json=true","fetch_graph":"https://pith.science/api/pith-number/GK3H2LNKILRAKGY2SZ44TXP5PH/graph.json","fetch_events":"https://pith.science/api/pith-number/GK3H2LNKILRAKGY2SZ44TXP5PH/events.json","actions":{"anchor_timestamp":"https://pith.science/pith/GK3H2LNKILRAKGY2SZ44TXP5PH/action/timestamp_anchor","attest_storage":"https://pith.science/pith/GK3H2LNKILRAKGY2SZ44TXP5PH/action/storage_attestation","attest_author":"https://pith.science/pith/GK3H2LNKILRAKGY2SZ44TXP5PH/action/author_attestation","sign_citation":"https://pith.science/pith/GK3H2LNKILRAKGY2SZ44TXP5PH/action/citation_signature","submit_replication":"https://pith.science/pith/GK3H2LNKILRAKGY2SZ44TXP5PH/action/replication_record"}},"created_at":"2026-05-18T01:13:22.174226+00:00","updated_at":"2026-05-18T01:13:22.174226+00:00"}