{"state_type":"pith_open_graph_state","state_version":"1.0","pith_number":"pith:2026:KQNLCYWPTF5UJWQ3TDNRMB3EBZ","merge_version":"pith-open-graph-merge-v1","event_count":6,"valid_event_count":6,"invalid_event_count":0,"equivocation_count":1,"current":{"canonical_record":{"metadata":{"abstract_canon_sha256":"d81c8739edebf7ec3815b15afd00e917342606cb7b4a3fe1f24762114f35445b","cross_cats_sorted":["cs.AI"],"license":"http://creativecommons.org/licenses/by-nc-nd/4.0/","primary_cat":"q-bio.GN","submitted_at":"2026-07-30T19:29:22Z","title_canon_sha256":"53f2147a4d18ac3e73457a92a6532dfc4bbaf1bd52fd00b84b41e4f5f45e8e28"},"schema_version":"1.0","source":{"id":"2608.00099","kind":"arxiv","version":1}},"source_aliases":[{"alias_kind":"arxiv","alias_value":"2608.00099","created_at":"2026-08-04T00:32:16Z"},{"alias_kind":"arxiv_version","alias_value":"2608.00099v1","created_at":"2026-08-04T00:32:16Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.2608.00099","created_at":"2026-08-04T00:32:16Z"},{"alias_kind":"pith_short_12","alias_value":"KQNLCYWPTF5U","created_at":"2026-08-04T00:32:16Z"},{"alias_kind":"pith_short_16","alias_value":"KQNLCYWPTF5UJWQ3","created_at":"2026-08-04T00:32:16Z"},{"alias_kind":"pith_short_8","alias_value":"KQNLCYWP","created_at":"2026-08-04T00:32:16Z"}],"graph_snapshots":[{"event_id":"sha256:89617a342c051b46f7d1155053b7cc39e30d3e5d6a3a445422035a478c25872d","target":"graph","created_at":"2026-08-04T00:32:16Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"graph_snapshot":{"author_claims":{"count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","strong_count":0},"builder_version":"pith-number-builder-2026-05-17-v1","claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"integrity":{"available":true,"clean":true,"detectors_run":[],"endpoint":"/pith/2608.00099/integrity.json","findings":[],"snapshot_sha256":"c28c3603d3b5d939e8dc4c7e95fa8dfce3d595e45f758748cecf8e644a296938","summary":{"advisory":0,"by_detector":{},"critical":0,"informational":0}},"paper":{"abstract_excerpt":"Gene Ontology (GO) enrichment analysis is a foundational tool for translating large-scale genomic data into biological insights, but typically yields hundreds of redundant terms that obscure overarching themes. Existing summarization tools rely on fixed similarity metrics (REVIGO, GOSemSim, clusterProfiler::simplify()), gene-overlap measures (Metascape), or static hierarchy mappings (GO-slim), and therefore cannot incorporate biological context. Manual curation provides context-aware grouping but is subjective and labor-intensive. A scalable, context-aware framework is needed to cluster GO ter","authors_text":"Jiaying Lu, Jie Xu, Peng Jin, Ximing Ran, Zhaohui Qin, Zhexing Wen","cross_cats":["cs.AI"],"headline":"","license":"http://creativecommons.org/licenses/by-nc-nd/4.0/","primary_cat":"q-bio.GN","submitted_at":"2026-07-30T19:29:22Z","title":"LLMBDC: Language Model for Biological Domains Oriented Clustering of Gene Ontology"},"references":{"count":0,"internal_anchors":0,"resolved_work":0,"sample":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"2608.00099","kind":"arxiv","version":1},"verdict":{"created_at":null,"id":null,"model_set":{},"one_line_summary":"","pipeline_version":null,"pith_extraction_headline":"","strongest_claim":"","weakest_assumption":""}},"verdict_id":null}}],"author_attestations":[],"timestamp_anchors":[],"storage_attestations":[],"citation_signatures":[],"replication_records":[],"corrections":[],"mirror_hints":[],"record_created":{"event_id":"sha256:d983d9c71468dc15513743be6630de110616c8e6db555844d708127e8c788f82","target":"record","created_at":"2026-08-04T00:32:16Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"attestation_state":"computed","canonical_record":{"metadata":{"abstract_canon_sha256":"d81c8739edebf7ec3815b15afd00e917342606cb7b4a3fe1f24762114f35445b","cross_cats_sorted":["cs.AI"],"license":"http://creativecommons.org/licenses/by-nc-nd/4.0/","primary_cat":"q-bio.GN","submitted_at":"2026-07-30T19:29:22Z","title_canon_sha256":"53f2147a4d18ac3e73457a92a6532dfc4bbaf1bd52fd00b84b41e4f5f45e8e28"},"schema_version":"1.0","source":{"id":"2608.00099","kind":"arxiv","version":1}},"canonical_sha256":"541ab162cf997b44da1b98db1607640e6ad8dc9c08faa4c90abe6e7255068150","receipt":{"algorithm":"ed25519","builder_version":"pith-number-builder-2026-05-17-v1","canonical_sha256":"541ab162cf997b44da1b98db1607640e6ad8dc9c08faa4c90abe6e7255068150","first_computed_at":"2026-08-04T00:32:16.074936Z","key_id":"pith-v1-2026-05","kind":"pith_receipt","last_reissued_at":"2026-08-04T00:32:16.074936Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","receipt_version":"0.3","signature_b64":"WmF6do1ofaCS0XgTy157tk/qycb6AondaQGKej4Ff5FUrIit0QS6+8gp0A2dmf9cXsHDbtwEvbxwuRzROzBaCA==","signature_status":"signed_v1","signed_at":"2026-08-04T00:32:16.077081Z","signed_message":"canonical_sha256_bytes"},"source_id":"2608.00099","source_kind":"arxiv","source_version":1}}},"equivocations":[{"signer_id":"pith.science","event_type":"integrity_finding","target":"integrity","event_ids":["sha256:3aff76d997dfc86c081ead4605439538b5450de06de6f42a3084fc949fcfbae7","sha256:61d563470d81149a4f82e892f149d492a08cbc2c78977fdb0958c556af36534b","sha256:881b8ee669dc8a213e19ead5a1f94da0b93d9b2ea52318810c83979229ae4a33","sha256:a65cfefbe73e7be3548719766620f3195385c0a5b61eee71332458b2d652d05c"]}],"invalid_events":[],"applied_event_ids":["sha256:d983d9c71468dc15513743be6630de110616c8e6db555844d708127e8c788f82","sha256:89617a342c051b46f7d1155053b7cc39e30d3e5d6a3a445422035a478c25872d"],"state_sha256":"0fae37ffe330b9a768bfbb55701f2cfb0e92abdc89d0db5177f8a42d32146bd3"}