{"state_type":"pith_open_graph_state","state_version":"1.0","pith_number":"pith:2013:OEBVHEZDVPCDDFROACPZZ4JHER","merge_version":"pith-open-graph-merge-v1","event_count":2,"valid_event_count":2,"invalid_event_count":0,"equivocation_count":0,"current":{"canonical_record":{"metadata":{"abstract_canon_sha256":"2f07cc9bf155918f49efad29eac33e9ef49ad937f9c0e8a6a6df9c378b8b1315","cross_cats_sorted":[],"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.OT","submitted_at":"2013-05-27T13:00:07Z","title_canon_sha256":"e26d70b1e98efffbdda199d6623a52cb202d3b1df0441e36d3f272953236ef22"},"schema_version":"1.0","source":{"id":"1305.6202","kind":"arxiv","version":2}},"source_aliases":[{"alias_kind":"arxiv","alias_value":"1305.6202","created_at":"2026-05-18T03:21:23Z"},{"alias_kind":"arxiv_version","alias_value":"1305.6202v2","created_at":"2026-05-18T03:21:23Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.1305.6202","created_at":"2026-05-18T03:21:23Z"},{"alias_kind":"pith_short_12","alias_value":"OEBVHEZDVPCD","created_at":"2026-05-18T12:27:54Z"},{"alias_kind":"pith_short_16","alias_value":"OEBVHEZDVPCDDFRO","created_at":"2026-05-18T12:27:54Z"},{"alias_kind":"pith_short_8","alias_value":"OEBVHEZD","created_at":"2026-05-18T12:27:54Z"}],"graph_snapshots":[{"event_id":"sha256:703f840410aed9c95d93643fe34629dd63e1686e1db64e14b9618d66c44eb6d3","target":"graph","created_at":"2026-05-18T03:21:23Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"graph_snapshot":{"author_claims":{"count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","strong_count":0},"builder_version":"pith-number-builder-2026-05-17-v1","claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"paper":{"abstract_excerpt":"This letter is a response to a Divergent Views article entitled <<The poor performance of TMM on microRNA-Seq>> (Garmire and Subramaniam 2013), which was a response to our Divergent Views article entitled <<miRNA-seq normalization comparisons need improvement>> (Zhou et al. 2013). Using reproducible code examples, we showed that they incorrectly used our normalization method and highlighted additional concerns with their study. Here, I wish to debunk several untrue or misleading statements made by the authors (hereafter referred to as GS) in their response. Unlike GSs, my claims are supported ","authors_text":"Mark D. Robinson","cross_cats":[],"headline":"","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.OT","submitted_at":"2013-05-27T13:00:07Z","title":"Agreeing to disagree, some ironies, disappointing scientific practice and a call for better: reply to <<The poor performance of TMM on microRNA-Seq>>"},"references":{"count":0,"internal_anchors":0,"resolved_work":0,"sample":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"1305.6202","kind":"arxiv","version":2},"verdict":{"created_at":null,"id":null,"model_set":{},"one_line_summary":"","pipeline_version":null,"pith_extraction_headline":"","strongest_claim":"","weakest_assumption":""}},"verdict_id":null}}],"author_attestations":[],"timestamp_anchors":[],"storage_attestations":[],"citation_signatures":[],"replication_records":[],"corrections":[],"mirror_hints":[],"record_created":{"event_id":"sha256:b7aa3834903f40427e89fa15e44c0b3e4d3072fc7cd8a682c7ff75d3d69bc495","target":"record","created_at":"2026-05-18T03:21:23Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"attestation_state":"computed","canonical_record":{"metadata":{"abstract_canon_sha256":"2f07cc9bf155918f49efad29eac33e9ef49ad937f9c0e8a6a6df9c378b8b1315","cross_cats_sorted":[],"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.OT","submitted_at":"2013-05-27T13:00:07Z","title_canon_sha256":"e26d70b1e98efffbdda199d6623a52cb202d3b1df0441e36d3f272953236ef22"},"schema_version":"1.0","source":{"id":"1305.6202","kind":"arxiv","version":2}},"canonical_sha256":"7103539323abc431962e009f9cf127245ba85dd1bc784ce89d260d64c5fe1833","receipt":{"algorithm":"ed25519","builder_version":"pith-number-builder-2026-05-17-v1","canonical_sha256":"7103539323abc431962e009f9cf127245ba85dd1bc784ce89d260d64c5fe1833","first_computed_at":"2026-05-18T03:21:23.290108Z","key_id":"pith-v1-2026-05","kind":"pith_receipt","last_reissued_at":"2026-05-18T03:21:23.290108Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","receipt_version":"0.3","signature_b64":"drVkP2WMtgznH/7FXMfVS6WBThXTQ3AsskvubLdvHJEGdTOvCHTtyFc3149KCIcCM1BFFMnQ3dv9/Q3bOXPfBw==","signature_status":"signed_v1","signed_at":"2026-05-18T03:21:23.290845Z","signed_message":"canonical_sha256_bytes"},"source_id":"1305.6202","source_kind":"arxiv","source_version":2}}},"equivocations":[],"invalid_events":[],"applied_event_ids":["sha256:b7aa3834903f40427e89fa15e44c0b3e4d3072fc7cd8a682c7ff75d3d69bc495","sha256:703f840410aed9c95d93643fe34629dd63e1686e1db64e14b9618d66c44eb6d3"],"state_sha256":"f468f3f7b7e54e8728b1f811f913fbe23b9e62f1aea304dbd862abe4fb85740a"}