{"bundle_type":"pith_open_graph_bundle","bundle_version":"1.0","pith_number":"pith:2024:OK4XDKCH4UHK4VWWNFBSGR76E4","short_pith_number":"pith:OK4XDKCH","canonical_record":{"source":{"id":"2401.00642","kind":"arxiv","version":1},"metadata":{"license":"http://creativecommons.org/licenses/by/4.0/","primary_cat":"cs.CL","submitted_at":"2024-01-01T03:04:14Z","cross_cats_sorted":[],"title_canon_sha256":"2d58ee84ca13e96bdc7033bf27670ce8d95a8cf21162065809609b8b015ed48c","abstract_canon_sha256":"2bb66c41a918258fd497198cb4513663d680726537914bf61aa573ebd89e6331"},"schema_version":"1.0"},"canonical_sha256":"72b971a847e50eae56d669432347fe273b39956e602c01e28bd64e397ad8b2f8","source":{"kind":"arxiv","id":"2401.00642","version":1},"source_aliases":[{"alias_kind":"arxiv","alias_value":"2401.00642","created_at":"2026-07-05T07:29:21Z"},{"alias_kind":"arxiv_version","alias_value":"2401.00642v1","created_at":"2026-07-05T07:29:21Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.2401.00642","created_at":"2026-07-05T07:29:21Z"},{"alias_kind":"pith_short_12","alias_value":"OK4XDKCH4UHK","created_at":"2026-07-05T07:29:21Z"},{"alias_kind":"pith_short_16","alias_value":"OK4XDKCH4UHK4VWW","created_at":"2026-07-05T07:29:21Z"},{"alias_kind":"pith_short_8","alias_value":"OK4XDKCH","created_at":"2026-07-05T07:29:21Z"}],"events":[{"event_type":"record_created","subject_pith_number":"pith:2024:OK4XDKCH4UHK4VWWNFBSGR76E4","target":"record","payload":{"canonical_record":{"source":{"id":"2401.00642","kind":"arxiv","version":1},"metadata":{"license":"http://creativecommons.org/licenses/by/4.0/","primary_cat":"cs.CL","submitted_at":"2024-01-01T03:04:14Z","cross_cats_sorted":[],"title_canon_sha256":"2d58ee84ca13e96bdc7033bf27670ce8d95a8cf21162065809609b8b015ed48c","abstract_canon_sha256":"2bb66c41a918258fd497198cb4513663d680726537914bf61aa573ebd89e6331"},"schema_version":"1.0"},"canonical_sha256":"72b971a847e50eae56d669432347fe273b39956e602c01e28bd64e397ad8b2f8","receipt":{"kind":"pith_receipt","key_id":"pith-v1-2026-05","algorithm":"ed25519","signed_at":"2026-07-05T07:29:21.185060Z","signature_b64":"WG6L/cL4Pw7QGeB9GKhTdjxhdzFJi7HrBIN4DmNpg9sF1r8lYDiUM2GstTcRRkX/DDNXaA55Dk3B96j4ETI8Ag==","signed_message":"canonical_sha256_bytes","builder_version":"pith-number-builder-2026-05-17-v1","receipt_version":"0.3","canonical_sha256":"72b971a847e50eae56d669432347fe273b39956e602c01e28bd64e397ad8b2f8","last_reissued_at":"2026-07-05T07:29:21.184615Z","signature_status":"signed_v1","first_computed_at":"2026-07-05T07:29:21.184615Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"source_kind":"arxiv","source_id":"2401.00642","source_version":1,"attestation_state":"computed"},"signer":{"signer_id":"pith.science","signer_type":"pith_registry","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"created_at":"2026-07-05T07:29:21Z","supersedes":[],"prev_event":null,"signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"TVvBcfisMy+giA3ntnZBEQo8LeWwRCJcmmwhMfLB1WFKmwdKahpiitg4J5v+P7yh5UDDdJt0XgHe7Al5/Yg0BQ==","signed_message":"open_graph_event_sha256_bytes","signed_at":"2026-08-13T19:19:04.905971Z"},"content_sha256":"e7ec983b5b5705258875cfd8ab56ae04f904ddbee8805c93e80af3ff321aea56","schema_version":"1.0","event_id":"sha256:e7ec983b5b5705258875cfd8ab56ae04f904ddbee8805c93e80af3ff321aea56"},{"event_type":"graph_snapshot","subject_pith_number":"pith:2024:OK4XDKCH4UHK4VWWNFBSGR76E4","target":"graph","payload":{"graph_snapshot":{"paper":{"title":"Predicting Anti-microbial Resistance using Large Language Models","license":"http://creativecommons.org/licenses/by/4.0/","headline":"","cross_cats":[],"primary_cat":"cs.CL","authors_text":"Bahrad Sokhansanj, Gail Rosen, Hyunwoo Yoo, James R. Brown","submitted_at":"2024-01-01T03:04:14Z","abstract_excerpt":"During times of increasing antibiotic resistance and the spread of infectious diseases like COVID-19, it is important to classify genes related to antibiotic resistance. As natural language processing has advanced with transformer-based language models, many language models that learn characteristics of nucleotide sequences have also emerged. These models show good performance in classifying various features of nucleotide sequences. When classifying nucleotide sequences, not only the sequence itself, but also various background knowledge is utilized. In this study, we use not only a nucleotide"},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"2401.00642","kind":"arxiv","version":1},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"integrity":{"clean":true,"summary":{"advisory":0,"critical":0,"by_detector":{},"informational":0},"endpoint":"/pith/2401.00642/integrity.json","findings":[],"available":true,"detectors_run":[],"snapshot_sha256":"c28c3603d3b5d939e8dc4c7e95fa8dfce3d595e45f758748cecf8e644a296938"},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"},"verdict_id":null},"signer":{"signer_id":"pith.science","signer_type":"pith_registry","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"created_at":"2026-07-05T07:29:21Z","supersedes":[],"prev_event":null,"signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"A2QI8F39NJ0ovMHQCltxeFvoNtM+KIZ0i0rwNT5di4mSyGl00hisWTlg2QWNt3l/7x3KSzPEx2SLIRyr0FmyDQ==","signed_message":"open_graph_event_sha256_bytes","signed_at":"2026-08-13T19:19:04.906929Z"},"content_sha256":"27b0362efad3649d15903dfc56bc849333d8006fca3cbc37f3589fa9abdba7f7","schema_version":"1.0","event_id":"sha256:27b0362efad3649d15903dfc56bc849333d8006fca3cbc37f3589fa9abdba7f7"}],"timestamp_proofs":[],"mirror_hints":[{"mirror_type":"https","name":"Pith Resolver","base_url":"https://pith.science","bundle_url":"https://pith.science/pith/OK4XDKCH4UHK4VWWNFBSGR76E4/bundle.json","state_url":"https://pith.science/pith/OK4XDKCH4UHK4VWWNFBSGR76E4/state.json","well_known_bundle_url":"https://pith.science/.well-known/pith/OK4XDKCH4UHK4VWWNFBSGR76E4/bundle.json","status":"primary"}],"public_keys":[{"key_id":"pith-v1-2026-05","algorithm":"ed25519","format":"raw","public_key_b64":"stVStoiQhXFxp4s2pdzPNoqVNBMojDU/fJ2db5S3CbM=","public_key_hex":"b2d552b68890857171a78b36a5dccf368a953413288c353f7c9d9d6f94b709b3","fingerprint_sha256_b32_first128bits":"RVFV5Z2OI2J3ZUO7ERDEBCYNKS","fingerprint_sha256_hex":"8d4b5ee74e4693bcd1df2446408b0d54","rotates_at":null,"url":"https://pith.science/pith-signing-key.json","notes":"Pith uses this Ed25519 key to sign canonical record SHA-256 digests. Verify with: ed25519_verify(public_key, message=canonical_sha256_bytes, signature=base64decode(signature_b64))."}],"merge_version":"pith-open-graph-merge-v1","built_at":"2026-08-13T19:19:04Z","links":{"resolver":"https://pith.science/pith/OK4XDKCH4UHK4VWWNFBSGR76E4","bundle":"https://pith.science/pith/OK4XDKCH4UHK4VWWNFBSGR76E4/bundle.json","state":"https://pith.science/pith/OK4XDKCH4UHK4VWWNFBSGR76E4/state.json","well_known_bundle":"https://pith.science/.well-known/pith/OK4XDKCH4UHK4VWWNFBSGR76E4/bundle.json"},"state":{"state_type":"pith_open_graph_state","state_version":"1.0","pith_number":"pith:2024:OK4XDKCH4UHK4VWWNFBSGR76E4","merge_version":"pith-open-graph-merge-v1","event_count":2,"valid_event_count":2,"invalid_event_count":0,"equivocation_count":0,"current":{"canonical_record":{"metadata":{"abstract_canon_sha256":"2bb66c41a918258fd497198cb4513663d680726537914bf61aa573ebd89e6331","cross_cats_sorted":[],"license":"http://creativecommons.org/licenses/by/4.0/","primary_cat":"cs.CL","submitted_at":"2024-01-01T03:04:14Z","title_canon_sha256":"2d58ee84ca13e96bdc7033bf27670ce8d95a8cf21162065809609b8b015ed48c"},"schema_version":"1.0","source":{"id":"2401.00642","kind":"arxiv","version":1}},"source_aliases":[{"alias_kind":"arxiv","alias_value":"2401.00642","created_at":"2026-07-05T07:29:21Z"},{"alias_kind":"arxiv_version","alias_value":"2401.00642v1","created_at":"2026-07-05T07:29:21Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.2401.00642","created_at":"2026-07-05T07:29:21Z"},{"alias_kind":"pith_short_12","alias_value":"OK4XDKCH4UHK","created_at":"2026-07-05T07:29:21Z"},{"alias_kind":"pith_short_16","alias_value":"OK4XDKCH4UHK4VWW","created_at":"2026-07-05T07:29:21Z"},{"alias_kind":"pith_short_8","alias_value":"OK4XDKCH","created_at":"2026-07-05T07:29:21Z"}],"graph_snapshots":[{"event_id":"sha256:27b0362efad3649d15903dfc56bc849333d8006fca3cbc37f3589fa9abdba7f7","target":"graph","created_at":"2026-07-05T07:29:21Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"graph_snapshot":{"author_claims":{"count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","strong_count":0},"builder_version":"pith-number-builder-2026-05-17-v1","claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"integrity":{"available":true,"clean":true,"detectors_run":[],"endpoint":"/pith/2401.00642/integrity.json","findings":[],"snapshot_sha256":"c28c3603d3b5d939e8dc4c7e95fa8dfce3d595e45f758748cecf8e644a296938","summary":{"advisory":0,"by_detector":{},"critical":0,"informational":0}},"paper":{"abstract_excerpt":"During times of increasing antibiotic resistance and the spread of infectious diseases like COVID-19, it is important to classify genes related to antibiotic resistance. As natural language processing has advanced with transformer-based language models, many language models that learn characteristics of nucleotide sequences have also emerged. These models show good performance in classifying various features of nucleotide sequences. When classifying nucleotide sequences, not only the sequence itself, but also various background knowledge is utilized. In this study, we use not only a nucleotide","authors_text":"Bahrad Sokhansanj, Gail Rosen, Hyunwoo Yoo, James R. Brown","cross_cats":[],"headline":"","license":"http://creativecommons.org/licenses/by/4.0/","primary_cat":"cs.CL","submitted_at":"2024-01-01T03:04:14Z","title":"Predicting Anti-microbial Resistance using Large Language Models"},"references":{"count":0,"internal_anchors":0,"resolved_work":0,"sample":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"2401.00642","kind":"arxiv","version":1},"verdict":{"created_at":null,"id":null,"model_set":{},"one_line_summary":"","pipeline_version":null,"pith_extraction_headline":"","strongest_claim":"","weakest_assumption":""}},"verdict_id":null}}],"author_attestations":[],"timestamp_anchors":[],"storage_attestations":[],"citation_signatures":[],"replication_records":[],"corrections":[],"mirror_hints":[],"record_created":{"event_id":"sha256:e7ec983b5b5705258875cfd8ab56ae04f904ddbee8805c93e80af3ff321aea56","target":"record","created_at":"2026-07-05T07:29:21Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"attestation_state":"computed","canonical_record":{"metadata":{"abstract_canon_sha256":"2bb66c41a918258fd497198cb4513663d680726537914bf61aa573ebd89e6331","cross_cats_sorted":[],"license":"http://creativecommons.org/licenses/by/4.0/","primary_cat":"cs.CL","submitted_at":"2024-01-01T03:04:14Z","title_canon_sha256":"2d58ee84ca13e96bdc7033bf27670ce8d95a8cf21162065809609b8b015ed48c"},"schema_version":"1.0","source":{"id":"2401.00642","kind":"arxiv","version":1}},"canonical_sha256":"72b971a847e50eae56d669432347fe273b39956e602c01e28bd64e397ad8b2f8","receipt":{"algorithm":"ed25519","builder_version":"pith-number-builder-2026-05-17-v1","canonical_sha256":"72b971a847e50eae56d669432347fe273b39956e602c01e28bd64e397ad8b2f8","first_computed_at":"2026-07-05T07:29:21.184615Z","key_id":"pith-v1-2026-05","kind":"pith_receipt","last_reissued_at":"2026-07-05T07:29:21.184615Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","receipt_version":"0.3","signature_b64":"WG6L/cL4Pw7QGeB9GKhTdjxhdzFJi7HrBIN4DmNpg9sF1r8lYDiUM2GstTcRRkX/DDNXaA55Dk3B96j4ETI8Ag==","signature_status":"signed_v1","signed_at":"2026-07-05T07:29:21.185060Z","signed_message":"canonical_sha256_bytes"},"source_id":"2401.00642","source_kind":"arxiv","source_version":1}}},"equivocations":[],"invalid_events":[],"applied_event_ids":["sha256:e7ec983b5b5705258875cfd8ab56ae04f904ddbee8805c93e80af3ff321aea56","sha256:27b0362efad3649d15903dfc56bc849333d8006fca3cbc37f3589fa9abdba7f7"],"state_sha256":"b4e5d8b3649ea6cfece71c6dadd436c783140cd5c79c9bf80ad6db7eb4003a1c"},"bundle_signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"fAbiN3Gp8prjulMDSjj7/+XT87YTCBtdJE+bqauE924LD+MPostGXnP0Kn8r6m3lSJKl+sTfI3rZKjob+J5zDg==","signed_message":"bundle_sha256_bytes","signed_at":"2026-08-13T19:19:05.009272Z","bundle_sha256":"5acac0fa3fa4b6c422f8b690723a25e1e042ce77420255ffb3717ab8a60ca7b4"}}