{"state_type":"pith_open_graph_state","state_version":"1.0","pith_number":"pith:2014:RE7XSEIIYNEYG5YOMH7CPQEFIB","merge_version":"pith-open-graph-merge-v1","event_count":2,"valid_event_count":2,"invalid_event_count":0,"equivocation_count":0,"current":{"canonical_record":{"metadata":{"abstract_canon_sha256":"aab9ad217b27a8367eb25effd802ae8abbf98e31c7e75e2249649bcc29ad634c","cross_cats_sorted":["q-bio.GN","q-bio.QM"],"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"cs.CE","submitted_at":"2014-03-28T18:41:39Z","title_canon_sha256":"0d2f4c283d1f924cc16d72882400fa105ca7c82000c78bd81092e1d6ea679f4b"},"schema_version":"1.0","source":{"id":"1403.7481","kind":"arxiv","version":1}},"source_aliases":[{"alias_kind":"arxiv","alias_value":"1403.7481","created_at":"2026-05-18T00:49:42Z"},{"alias_kind":"arxiv_version","alias_value":"1403.7481v1","created_at":"2026-05-18T00:49:42Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.1403.7481","created_at":"2026-05-18T00:49:42Z"},{"alias_kind":"pith_short_12","alias_value":"RE7XSEIIYNEY","created_at":"2026-05-18T12:28:46Z"},{"alias_kind":"pith_short_16","alias_value":"RE7XSEIIYNEYG5YO","created_at":"2026-05-18T12:28:46Z"},{"alias_kind":"pith_short_8","alias_value":"RE7XSEII","created_at":"2026-05-18T12:28:46Z"}],"graph_snapshots":[{"event_id":"sha256:7702021a91465306577a6bf16d1ec57b7a0ca55d94a6c2a6fe54ff1855f71187","target":"graph","created_at":"2026-05-18T00:49:42Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"graph_snapshot":{"author_claims":{"count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","strong_count":0},"builder_version":"pith-number-builder-2026-05-17-v1","claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"paper":{"abstract_excerpt":"Motivation: The availability of thousands of invidual genomes of one species should boost rapid progress in personalized medicine or understanding of the interaction between genotype and phenotype, to name a few applications. A key operation useful in such analyses is aligning sequencing reads against a collection of genomes, which is costly with the use of existing algorithms due to their large memory requirements.\n  Results: We present MuGI, Multiple Genome Index, which reports all occurrences of a given pattern, in exact and approximate matching model, against a collection of thousand(s) ge","authors_text":"Agnieszka Danek, Sebastian Deorowicz, Szymon Grabowski","cross_cats":["q-bio.GN","q-bio.QM"],"headline":"","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"cs.CE","submitted_at":"2014-03-28T18:41:39Z","title":"Indexing large genome collections on a PC"},"references":{"count":0,"internal_anchors":0,"resolved_work":0,"sample":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"1403.7481","kind":"arxiv","version":1},"verdict":{"created_at":null,"id":null,"model_set":{},"one_line_summary":"","pipeline_version":null,"pith_extraction_headline":"","strongest_claim":"","weakest_assumption":""}},"verdict_id":null}}],"author_attestations":[],"timestamp_anchors":[],"storage_attestations":[],"citation_signatures":[],"replication_records":[],"corrections":[],"mirror_hints":[],"record_created":{"event_id":"sha256:125da99da296ecf6a47a82e5c815e92be3a812333e289ad66fc0efeaceefdf10","target":"record","created_at":"2026-05-18T00:49:42Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"attestation_state":"computed","canonical_record":{"metadata":{"abstract_canon_sha256":"aab9ad217b27a8367eb25effd802ae8abbf98e31c7e75e2249649bcc29ad634c","cross_cats_sorted":["q-bio.GN","q-bio.QM"],"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"cs.CE","submitted_at":"2014-03-28T18:41:39Z","title_canon_sha256":"0d2f4c283d1f924cc16d72882400fa105ca7c82000c78bd81092e1d6ea679f4b"},"schema_version":"1.0","source":{"id":"1403.7481","kind":"arxiv","version":1}},"canonical_sha256":"893f791108c34983770e61fe27c085404d2ce62cafcce326b2b7c582e4ba6cf0","receipt":{"algorithm":"ed25519","builder_version":"pith-number-builder-2026-05-17-v1","canonical_sha256":"893f791108c34983770e61fe27c085404d2ce62cafcce326b2b7c582e4ba6cf0","first_computed_at":"2026-05-18T00:49:42.862988Z","key_id":"pith-v1-2026-05","kind":"pith_receipt","last_reissued_at":"2026-05-18T00:49:42.862988Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","receipt_version":"0.3","signature_b64":"TcllIL3WnZu+7LCn5uVyufd4ECzVwL/p8/5MKANSgZBegCrbkUP8o9Ns9vZFH7alL+rdtwHKy0JyGgHqGUAkCw==","signature_status":"signed_v1","signed_at":"2026-05-18T00:49:42.863508Z","signed_message":"canonical_sha256_bytes"},"source_id":"1403.7481","source_kind":"arxiv","source_version":1}}},"equivocations":[],"invalid_events":[],"applied_event_ids":["sha256:125da99da296ecf6a47a82e5c815e92be3a812333e289ad66fc0efeaceefdf10","sha256:7702021a91465306577a6bf16d1ec57b7a0ca55d94a6c2a6fe54ff1855f71187"],"state_sha256":"90ab0a48ad9ca7072cad424f8768633f3b2b371b72e8e937cf6b92bd5de8b0e5"}