{"state_type":"pith_open_graph_state","state_version":"1.0","pith_number":"pith:2023:RNSMDDDAWTX5LXO4FVLYAHOC2Z","merge_version":"pith-open-graph-merge-v1","event_count":2,"valid_event_count":2,"invalid_event_count":0,"equivocation_count":0,"current":{"canonical_record":{"metadata":{"abstract_canon_sha256":"12e8ec29d77a4eb22f0d724da920e6c4abff35d7000f198373940ecbcc5359e0","cross_cats_sorted":["cs.LG"],"license":"http://creativecommons.org/licenses/by/4.0/","primary_cat":"q-bio.BM","submitted_at":"2023-12-04T08:46:24Z","title_canon_sha256":"3e701d07235288a99dfdbe88758ee5e350b72080dd07e98516be2a252422b113"},"schema_version":"1.0","source":{"id":"2401.05351","kind":"arxiv","version":1}},"source_aliases":[{"alias_kind":"arxiv","alias_value":"2401.05351","created_at":"2026-07-05T07:32:28Z"},{"alias_kind":"arxiv_version","alias_value":"2401.05351v1","created_at":"2026-07-05T07:32:28Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.2401.05351","created_at":"2026-07-05T07:32:28Z"},{"alias_kind":"pith_short_12","alias_value":"RNSMDDDAWTX5","created_at":"2026-07-05T07:32:28Z"},{"alias_kind":"pith_short_16","alias_value":"RNSMDDDAWTX5LXO4","created_at":"2026-07-05T07:32:28Z"},{"alias_kind":"pith_short_8","alias_value":"RNSMDDDA","created_at":"2026-07-05T07:32:28Z"}],"graph_snapshots":[{"event_id":"sha256:db9f2cf0844e7623931b860090e8868284cddab565cff1eacfbc51ce63293789","target":"graph","created_at":"2026-07-05T07:32:28Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"graph_snapshot":{"author_claims":{"count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","strong_count":0},"builder_version":"pith-number-builder-2026-05-17-v1","claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"integrity":{"available":true,"clean":true,"detectors_run":[],"endpoint":"/pith/2401.05351/integrity.json","findings":[],"snapshot_sha256":"c28c3603d3b5d939e8dc4c7e95fa8dfce3d595e45f758748cecf8e644a296938","summary":{"advisory":0,"by_detector":{},"critical":0,"informational":0}},"paper":{"abstract_excerpt":"Accurate RNA secondary structure prediction is vital for understanding cellular regulation and disease mechanisms. Deep learning (DL) methods have surpassed traditional algorithms by predicting complex features like pseudoknots and multi-interacting base pairs. However, traditional distance measures can hardly deal with such tertiary interactions and the currently used evaluation measures (F1 score, MCC) have limitations. We propose the Weisfeiler-Lehman graph kernel (WL) as an alternative metric. Embracing graph-based metrics like WL enables fair and accurate evaluation of RNA structure predi","authors_text":"Daniel Fertmann, Frank Hutter, Frederic Runge, J\\\"org K. H. Franke","cross_cats":["cs.LG"],"headline":"","license":"http://creativecommons.org/licenses/by/4.0/","primary_cat":"q-bio.BM","submitted_at":"2023-12-04T08:46:24Z","title":"Rethinking Performance Measures of RNA Secondary Structure Problems"},"references":{"count":0,"internal_anchors":0,"resolved_work":0,"sample":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"2401.05351","kind":"arxiv","version":1},"verdict":{"created_at":null,"id":null,"model_set":{},"one_line_summary":"","pipeline_version":null,"pith_extraction_headline":"","strongest_claim":"","weakest_assumption":""}},"verdict_id":null}}],"author_attestations":[],"timestamp_anchors":[],"storage_attestations":[],"citation_signatures":[],"replication_records":[],"corrections":[],"mirror_hints":[],"record_created":{"event_id":"sha256:753bd8ac7f5c7b87cc67db9e8702920e61c01d666ab5a46124a74baeb85227b9","target":"record","created_at":"2026-07-05T07:32:28Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"attestation_state":"computed","canonical_record":{"metadata":{"abstract_canon_sha256":"12e8ec29d77a4eb22f0d724da920e6c4abff35d7000f198373940ecbcc5359e0","cross_cats_sorted":["cs.LG"],"license":"http://creativecommons.org/licenses/by/4.0/","primary_cat":"q-bio.BM","submitted_at":"2023-12-04T08:46:24Z","title_canon_sha256":"3e701d07235288a99dfdbe88758ee5e350b72080dd07e98516be2a252422b113"},"schema_version":"1.0","source":{"id":"2401.05351","kind":"arxiv","version":1}},"canonical_sha256":"8b64c18c60b4efd5dddc2d57801dc2d6643890bb2b61458f81f4b2dfacfcd209","receipt":{"algorithm":"ed25519","builder_version":"pith-number-builder-2026-05-17-v1","canonical_sha256":"8b64c18c60b4efd5dddc2d57801dc2d6643890bb2b61458f81f4b2dfacfcd209","first_computed_at":"2026-07-05T07:32:28.321617Z","key_id":"pith-v1-2026-05","kind":"pith_receipt","last_reissued_at":"2026-07-05T07:32:28.321617Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","receipt_version":"0.3","signature_b64":"Y5AllVOTXCP1ptCzy+bTBezRjHpYf7cTbV5lgpwN0CpVGlGVnk0zVabtiwgOjPUoqZF8VnjwayMWkSm3BmbHAg==","signature_status":"signed_v1","signed_at":"2026-07-05T07:32:28.322204Z","signed_message":"canonical_sha256_bytes"},"source_id":"2401.05351","source_kind":"arxiv","source_version":1}}},"equivocations":[],"invalid_events":[],"applied_event_ids":["sha256:753bd8ac7f5c7b87cc67db9e8702920e61c01d666ab5a46124a74baeb85227b9","sha256:db9f2cf0844e7623931b860090e8868284cddab565cff1eacfbc51ce63293789"],"state_sha256":"4db5c22ddfe96361b174ccee22a05afb3c467eb2108636b9b6d540b2ce507a1c"}