{"bundle_type":"pith_open_graph_bundle","bundle_version":"1.0","pith_number":"pith:2017:SQZJD4CMEHDQZ4MJ4A2Q53X7IK","short_pith_number":"pith:SQZJD4CM","canonical_record":{"source":{"id":"1712.09403","kind":"arxiv","version":1},"metadata":{"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.GN","submitted_at":"2017-12-05T20:13:56Z","cross_cats_sorted":[],"title_canon_sha256":"667c5156a84b39e36f913be9ba36b84278897ac8eae1070e091c70770facd972","abstract_canon_sha256":"1bd55f1dc9ae410d97866742ab872a52df08a4d4e4a02c8ee6742d93f383d305"},"schema_version":"1.0"},"canonical_sha256":"943291f04c21c70cf189e0350eeeff42951fecc18e2eb6d4d54f90078f770f80","source":{"kind":"arxiv","id":"1712.09403","version":1},"source_aliases":[{"alias_kind":"arxiv","alias_value":"1712.09403","created_at":"2026-05-18T00:27:08Z"},{"alias_kind":"arxiv_version","alias_value":"1712.09403v1","created_at":"2026-05-18T00:27:08Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.1712.09403","created_at":"2026-05-18T00:27:08Z"},{"alias_kind":"pith_short_12","alias_value":"SQZJD4CMEHDQ","created_at":"2026-05-18T12:31:43Z"},{"alias_kind":"pith_short_16","alias_value":"SQZJD4CMEHDQZ4MJ","created_at":"2026-05-18T12:31:43Z"},{"alias_kind":"pith_short_8","alias_value":"SQZJD4CM","created_at":"2026-05-18T12:31:43Z"}],"events":[{"event_type":"record_created","subject_pith_number":"pith:2017:SQZJD4CMEHDQZ4MJ4A2Q53X7IK","target":"record","payload":{"canonical_record":{"source":{"id":"1712.09403","kind":"arxiv","version":1},"metadata":{"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.GN","submitted_at":"2017-12-05T20:13:56Z","cross_cats_sorted":[],"title_canon_sha256":"667c5156a84b39e36f913be9ba36b84278897ac8eae1070e091c70770facd972","abstract_canon_sha256":"1bd55f1dc9ae410d97866742ab872a52df08a4d4e4a02c8ee6742d93f383d305"},"schema_version":"1.0"},"canonical_sha256":"943291f04c21c70cf189e0350eeeff42951fecc18e2eb6d4d54f90078f770f80","receipt":{"kind":"pith_receipt","key_id":"pith-v1-2026-05","algorithm":"ed25519","signed_at":"2026-05-18T00:27:08.543390Z","signature_b64":"IMJb+TiNRRiVEhrVuzOaARXZ5E5GFsThw9nDutQLds9Ru4YtZz90HkwHCi4ni0VdldeIx+CXv6sdwSH7LM9GCg==","signed_message":"canonical_sha256_bytes","builder_version":"pith-number-builder-2026-05-17-v1","receipt_version":"0.3","canonical_sha256":"943291f04c21c70cf189e0350eeeff42951fecc18e2eb6d4d54f90078f770f80","last_reissued_at":"2026-05-18T00:27:08.542736Z","signature_status":"signed_v1","first_computed_at":"2026-05-18T00:27:08.542736Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"source_kind":"arxiv","source_id":"1712.09403","source_version":1,"attestation_state":"computed"},"signer":{"signer_id":"pith.science","signer_type":"pith_registry","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"created_at":"2026-05-18T00:27:08Z","supersedes":[],"prev_event":null,"signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"e4Nkk3kLbQFVYFkeYUWZZOVYk1jXP5GtWYLQ9I4IxuC2IravYb/Pn2RNLIeoTIgd/xmlf7FziKshAtcoOVs3Cw==","signed_message":"open_graph_event_sha256_bytes","signed_at":"2026-06-11T16:53:58.547618Z"},"content_sha256":"7a93caf7ebbf88a1b8d62a96e06aef8039ee0e60b52667466cf384f151ff06a1","schema_version":"1.0","event_id":"sha256:7a93caf7ebbf88a1b8d62a96e06aef8039ee0e60b52667466cf384f151ff06a1"},{"event_type":"graph_snapshot","subject_pith_number":"pith:2017:SQZJD4CMEHDQZ4MJ4A2Q53X7IK","target":"graph","payload":{"graph_snapshot":{"paper":{"title":"DCJVis: visualization of genome rearrangements using DCJ operations","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","headline":"","cross_cats":[],"primary_cat":"q-bio.GN","authors_text":"Sergey Bereg, Sruthi Chappidi","submitted_at":"2017-12-05T20:13:56Z","abstract_excerpt":"The {\\em double-cut-and-join} (DCJ) operation, introduced by Yancopoulos \\emph{et al.}, allows minimum edit distance to be computed by modeling all possible classical rearrangement operations, such as inversions, fusions, fissions, translocations, and transpositions, in linear-time between two genomes. However, there is lack of visualization tool that can effectively present DCJ operations that will help biologists to use DCJ operation. In this paper, a new visualization program is introduced, DCJVis, to create a diagram of each DCJ operation necessary to transform between the genomes of two d"},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"1712.09403","kind":"arxiv","version":1},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"},"verdict_id":null},"signer":{"signer_id":"pith.science","signer_type":"pith_registry","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"created_at":"2026-05-18T00:27:08Z","supersedes":[],"prev_event":null,"signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"oEYN5fFTAdDzuUatkd2ns/BrhfOZpCKAs188LCJJYqSdLluOU9Rp5enSzJY0DNRZlcToSgZ5mtTD/w/EcBJgBA==","signed_message":"open_graph_event_sha256_bytes","signed_at":"2026-06-11T16:53:58.548370Z"},"content_sha256":"0a265540a0702ba056f9a2b3d3a5d9be9ee14fcb080b0f787d5451e67f051508","schema_version":"1.0","event_id":"sha256:0a265540a0702ba056f9a2b3d3a5d9be9ee14fcb080b0f787d5451e67f051508"}],"timestamp_proofs":[],"mirror_hints":[{"mirror_type":"https","name":"Pith Resolver","base_url":"https://pith.science","bundle_url":"https://pith.science/pith/SQZJD4CMEHDQZ4MJ4A2Q53X7IK/bundle.json","state_url":"https://pith.science/pith/SQZJD4CMEHDQZ4MJ4A2Q53X7IK/state.json","well_known_bundle_url":"https://pith.science/.well-known/pith/SQZJD4CMEHDQZ4MJ4A2Q53X7IK/bundle.json","status":"primary"}],"public_keys":[{"key_id":"pith-v1-2026-05","algorithm":"ed25519","format":"raw","public_key_b64":"stVStoiQhXFxp4s2pdzPNoqVNBMojDU/fJ2db5S3CbM=","public_key_hex":"b2d552b68890857171a78b36a5dccf368a953413288c353f7c9d9d6f94b709b3","fingerprint_sha256_b32_first128bits":"RVFV5Z2OI2J3ZUO7ERDEBCYNKS","fingerprint_sha256_hex":"8d4b5ee74e4693bcd1df2446408b0d54","rotates_at":null,"url":"https://pith.science/pith-signing-key.json","notes":"Pith uses this Ed25519 key to sign canonical record SHA-256 digests. Verify with: ed25519_verify(public_key, message=canonical_sha256_bytes, signature=base64decode(signature_b64))."}],"merge_version":"pith-open-graph-merge-v1","built_at":"2026-06-11T16:53:58Z","links":{"resolver":"https://pith.science/pith/SQZJD4CMEHDQZ4MJ4A2Q53X7IK","bundle":"https://pith.science/pith/SQZJD4CMEHDQZ4MJ4A2Q53X7IK/bundle.json","state":"https://pith.science/pith/SQZJD4CMEHDQZ4MJ4A2Q53X7IK/state.json","well_known_bundle":"https://pith.science/.well-known/pith/SQZJD4CMEHDQZ4MJ4A2Q53X7IK/bundle.json"},"state":{"state_type":"pith_open_graph_state","state_version":"1.0","pith_number":"pith:2017:SQZJD4CMEHDQZ4MJ4A2Q53X7IK","merge_version":"pith-open-graph-merge-v1","event_count":2,"valid_event_count":2,"invalid_event_count":0,"equivocation_count":0,"current":{"canonical_record":{"metadata":{"abstract_canon_sha256":"1bd55f1dc9ae410d97866742ab872a52df08a4d4e4a02c8ee6742d93f383d305","cross_cats_sorted":[],"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.GN","submitted_at":"2017-12-05T20:13:56Z","title_canon_sha256":"667c5156a84b39e36f913be9ba36b84278897ac8eae1070e091c70770facd972"},"schema_version":"1.0","source":{"id":"1712.09403","kind":"arxiv","version":1}},"source_aliases":[{"alias_kind":"arxiv","alias_value":"1712.09403","created_at":"2026-05-18T00:27:08Z"},{"alias_kind":"arxiv_version","alias_value":"1712.09403v1","created_at":"2026-05-18T00:27:08Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.1712.09403","created_at":"2026-05-18T00:27:08Z"},{"alias_kind":"pith_short_12","alias_value":"SQZJD4CMEHDQ","created_at":"2026-05-18T12:31:43Z"},{"alias_kind":"pith_short_16","alias_value":"SQZJD4CMEHDQZ4MJ","created_at":"2026-05-18T12:31:43Z"},{"alias_kind":"pith_short_8","alias_value":"SQZJD4CM","created_at":"2026-05-18T12:31:43Z"}],"graph_snapshots":[{"event_id":"sha256:0a265540a0702ba056f9a2b3d3a5d9be9ee14fcb080b0f787d5451e67f051508","target":"graph","created_at":"2026-05-18T00:27:08Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"graph_snapshot":{"author_claims":{"count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","strong_count":0},"builder_version":"pith-number-builder-2026-05-17-v1","claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"paper":{"abstract_excerpt":"The {\\em double-cut-and-join} (DCJ) operation, introduced by Yancopoulos \\emph{et al.}, allows minimum edit distance to be computed by modeling all possible classical rearrangement operations, such as inversions, fusions, fissions, translocations, and transpositions, in linear-time between two genomes. However, there is lack of visualization tool that can effectively present DCJ operations that will help biologists to use DCJ operation. In this paper, a new visualization program is introduced, DCJVis, to create a diagram of each DCJ operation necessary to transform between the genomes of two d","authors_text":"Sergey Bereg, Sruthi Chappidi","cross_cats":[],"headline":"","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.GN","submitted_at":"2017-12-05T20:13:56Z","title":"DCJVis: visualization of genome rearrangements using DCJ operations"},"references":{"count":0,"internal_anchors":0,"resolved_work":0,"sample":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"1712.09403","kind":"arxiv","version":1},"verdict":{"created_at":null,"id":null,"model_set":{},"one_line_summary":"","pipeline_version":null,"pith_extraction_headline":"","strongest_claim":"","weakest_assumption":""}},"verdict_id":null}}],"author_attestations":[],"timestamp_anchors":[],"storage_attestations":[],"citation_signatures":[],"replication_records":[],"corrections":[],"mirror_hints":[],"record_created":{"event_id":"sha256:7a93caf7ebbf88a1b8d62a96e06aef8039ee0e60b52667466cf384f151ff06a1","target":"record","created_at":"2026-05-18T00:27:08Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"attestation_state":"computed","canonical_record":{"metadata":{"abstract_canon_sha256":"1bd55f1dc9ae410d97866742ab872a52df08a4d4e4a02c8ee6742d93f383d305","cross_cats_sorted":[],"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.GN","submitted_at":"2017-12-05T20:13:56Z","title_canon_sha256":"667c5156a84b39e36f913be9ba36b84278897ac8eae1070e091c70770facd972"},"schema_version":"1.0","source":{"id":"1712.09403","kind":"arxiv","version":1}},"canonical_sha256":"943291f04c21c70cf189e0350eeeff42951fecc18e2eb6d4d54f90078f770f80","receipt":{"algorithm":"ed25519","builder_version":"pith-number-builder-2026-05-17-v1","canonical_sha256":"943291f04c21c70cf189e0350eeeff42951fecc18e2eb6d4d54f90078f770f80","first_computed_at":"2026-05-18T00:27:08.542736Z","key_id":"pith-v1-2026-05","kind":"pith_receipt","last_reissued_at":"2026-05-18T00:27:08.542736Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","receipt_version":"0.3","signature_b64":"IMJb+TiNRRiVEhrVuzOaARXZ5E5GFsThw9nDutQLds9Ru4YtZz90HkwHCi4ni0VdldeIx+CXv6sdwSH7LM9GCg==","signature_status":"signed_v1","signed_at":"2026-05-18T00:27:08.543390Z","signed_message":"canonical_sha256_bytes"},"source_id":"1712.09403","source_kind":"arxiv","source_version":1}}},"equivocations":[],"invalid_events":[],"applied_event_ids":["sha256:7a93caf7ebbf88a1b8d62a96e06aef8039ee0e60b52667466cf384f151ff06a1","sha256:0a265540a0702ba056f9a2b3d3a5d9be9ee14fcb080b0f787d5451e67f051508"],"state_sha256":"ead934e2302be85e6d3cb9af2534ff1a9a1bf51268b06e2e0ae131a02fb5c222"},"bundle_signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"3UK075e+3whMluwTaxIgKTv0Fn5ViZyPTBlf0E8pFkxcN4bTwhIzRuTBRT6ARS6DDHAq0mlaDSV7KySuyhVHBQ==","signed_message":"bundle_sha256_bytes","signed_at":"2026-06-11T16:53:58.552194Z","bundle_sha256":"ef159cd70601bc959482a3a8e39d24736e67ac926e81cdd2feeef0e98caecf15"}}