{"state_type":"pith_open_graph_state","state_version":"1.0","pith_number":"pith:2024:T54HRTD57HRRLO5OW4QJJSYXDJ","merge_version":"pith-open-graph-merge-v1","event_count":2,"valid_event_count":2,"invalid_event_count":0,"equivocation_count":0,"current":{"canonical_record":{"metadata":{"abstract_canon_sha256":"a4a0cb91359b8d550a14b0a58ca8d21c116fd21b76f9a7e5a72c77e7e75e9e91","cross_cats_sorted":["cs.AI","cs.LG"],"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.QM","submitted_at":"2024-01-04T20:49:32Z","title_canon_sha256":"20fd9a0d44b61925548bc7716d170e78d259a13b2937ee4009c6cf245cbb54d4"},"schema_version":"1.0","source":{"id":"2401.10211","kind":"arxiv","version":1}},"source_aliases":[{"alias_kind":"arxiv","alias_value":"2401.10211","created_at":"2026-07-05T07:35:08Z"},{"alias_kind":"arxiv_version","alias_value":"2401.10211v1","created_at":"2026-07-05T07:35:08Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.2401.10211","created_at":"2026-07-05T07:35:08Z"},{"alias_kind":"pith_short_12","alias_value":"T54HRTD57HRR","created_at":"2026-07-05T07:35:08Z"},{"alias_kind":"pith_short_16","alias_value":"T54HRTD57HRRLO5O","created_at":"2026-07-05T07:35:08Z"},{"alias_kind":"pith_short_8","alias_value":"T54HRTD5","created_at":"2026-07-05T07:35:08Z"}],"graph_snapshots":[{"event_id":"sha256:04e536d3dee02b9a0a302daff60b8eaf81cf55603d3c5d6ae623f8a309adc9bc","target":"graph","created_at":"2026-07-05T07:35:08Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"graph_snapshot":{"author_claims":{"count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","strong_count":0},"builder_version":"pith-number-builder-2026-05-17-v1","claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"integrity":{"available":true,"clean":true,"detectors_run":[],"endpoint":"/pith/2401.10211/integrity.json","findings":[],"snapshot_sha256":"c28c3603d3b5d939e8dc4c7e95fa8dfce3d595e45f758748cecf8e644a296938","summary":{"advisory":0,"by_detector":{},"critical":0,"informational":0}},"paper":{"abstract_excerpt":"Protein post-translational modification (PTM) site prediction is a fundamental task in bioinformatics. Several computational methods have been developed to predict PTM sites. However, existing methods ignore the structure information and merely utilize protein sequences. Furthermore, designing a more fine-grained structure representation learning method is urgently needed as PTM is a biological event that occurs at the atom granularity. In this paper, we propose a PTM site prediction method by Coupling of Multi-Granularity structure and Multi-Scale sequence representation, PTM-CMGMS for brevit","authors_text":"Lida Zhu, Menglu Li, Wen Zhang, Zhengyi Li","cross_cats":["cs.AI","cs.LG"],"headline":"","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.QM","submitted_at":"2024-01-04T20:49:32Z","title":"Improving PTM Site Prediction by Coupling of Multi-Granularity Structure and Multi-Scale Sequence Representation"},"references":{"count":0,"internal_anchors":0,"resolved_work":0,"sample":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"2401.10211","kind":"arxiv","version":1},"verdict":{"created_at":null,"id":null,"model_set":{},"one_line_summary":"","pipeline_version":null,"pith_extraction_headline":"","strongest_claim":"","weakest_assumption":""}},"verdict_id":null}}],"author_attestations":[],"timestamp_anchors":[],"storage_attestations":[],"citation_signatures":[],"replication_records":[],"corrections":[],"mirror_hints":[],"record_created":{"event_id":"sha256:0d5906f2762b24724fc7bccd1510a64c707d5cab50e083ba0b926b6c529a4dbf","target":"record","created_at":"2026-07-05T07:35:08Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"attestation_state":"computed","canonical_record":{"metadata":{"abstract_canon_sha256":"a4a0cb91359b8d550a14b0a58ca8d21c116fd21b76f9a7e5a72c77e7e75e9e91","cross_cats_sorted":["cs.AI","cs.LG"],"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.QM","submitted_at":"2024-01-04T20:49:32Z","title_canon_sha256":"20fd9a0d44b61925548bc7716d170e78d259a13b2937ee4009c6cf245cbb54d4"},"schema_version":"1.0","source":{"id":"2401.10211","kind":"arxiv","version":1}},"canonical_sha256":"9f7878cc7df9e315bbaeb72094cb171a603dbdd6580371a713dfc5cd41805e8e","receipt":{"algorithm":"ed25519","builder_version":"pith-number-builder-2026-05-17-v1","canonical_sha256":"9f7878cc7df9e315bbaeb72094cb171a603dbdd6580371a713dfc5cd41805e8e","first_computed_at":"2026-07-05T07:35:08.246329Z","key_id":"pith-v1-2026-05","kind":"pith_receipt","last_reissued_at":"2026-07-05T07:35:08.246329Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","receipt_version":"0.3","signature_b64":"YPEwv8jTdnaVcuVbzlFBiK9pcuFmd3gvvwKxPB1nCelCbgndMaI59dN+x71fS16o6MPnnMBU0acwksRCSn1oCw==","signature_status":"signed_v1","signed_at":"2026-07-05T07:35:08.246753Z","signed_message":"canonical_sha256_bytes"},"source_id":"2401.10211","source_kind":"arxiv","source_version":1}}},"equivocations":[],"invalid_events":[],"applied_event_ids":["sha256:0d5906f2762b24724fc7bccd1510a64c707d5cab50e083ba0b926b6c529a4dbf","sha256:04e536d3dee02b9a0a302daff60b8eaf81cf55603d3c5d6ae623f8a309adc9bc"],"state_sha256":"5028ab24bf198ae36518e42163dafda47e7ed86c9e5f43df3ffe83849c605962"}