{"record_type":"pith_number_record","schema_url":"https://pith.science/schemas/pith-number/v1.json","pith_number":"pith:2015:TP7MYUJQHELVSX3UREWW5JTMRO","short_pith_number":"pith:TP7MYUJQ","schema_version":"1.0","canonical_sha256":"9bfecc51303917595f74892d6ea66c8b81389a05c08d170d219b024ec7d31158","source":{"kind":"arxiv","id":"1512.01801","version":2},"attestation_state":"computed","paper":{"title":"Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","headline":"","cross_cats":[],"primary_cat":"q-bio.GN","authors_text":"Heng Li","submitted_at":"2015-12-06T15:16:02Z","abstract_excerpt":"Motivation: Single Molecule Real-Time (SMRT) sequencing technology and Oxford Nanopore technologies (ONT) produce reads over 10kbp in length, which have enabled high-quality genome assembly at an affordable cost. However, at present, long reads have an error rate as high as 10-15%. Complex and computationally intensive pipelines are required to assemble such reads.\n  Results: We present a new mapper, minimap, and a de novo assembler, miniasm, for efficiently mapping and assembling SMRT and ONT reads without an error correction stage. They can often assemble a sequencing run of bacterial data i"},"verification_status":{"content_addressed":true,"pith_receipt":true,"author_attested":false,"weak_author_claims":0,"strong_author_claims":0,"externally_anchored":false,"storage_verified":false,"citation_signatures":0,"replication_records":0,"graph_snapshot":true,"references_resolved":false,"formal_links_present":false},"canonical_record":{"source":{"id":"1512.01801","kind":"arxiv","version":2},"metadata":{"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.GN","submitted_at":"2015-12-06T15:16:02Z","cross_cats_sorted":[],"title_canon_sha256":"d555ca37d22de2f16a57fabd9cc92fb74c62f6b6c8064d4a889b44fe9958a736","abstract_canon_sha256":"6dd5bfd63f99410beff207860f33eb408b66391e47b354644296f0152718f9cf"},"schema_version":"1.0"},"receipt":{"kind":"pith_receipt","key_id":"pith-v1-2026-05","algorithm":"ed25519","signed_at":"2026-05-18T00:38:40.098354Z","signature_b64":"stXYpWRR5RdUV1kIvly/SMDqbkRdg8IxsglynhYLq0uNyLMB+jvFL/c/EkZMuxrZR6ai+SAu2MZzTWDsnDE6AQ==","signed_message":"canonical_sha256_bytes","builder_version":"pith-number-builder-2026-05-17-v1","receipt_version":"0.3","canonical_sha256":"9bfecc51303917595f74892d6ea66c8b81389a05c08d170d219b024ec7d31158","last_reissued_at":"2026-05-18T00:38:40.097755Z","signature_status":"signed_v1","first_computed_at":"2026-05-18T00:38:40.097755Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"graph_snapshot":{"paper":{"title":"Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","headline":"","cross_cats":[],"primary_cat":"q-bio.GN","authors_text":"Heng Li","submitted_at":"2015-12-06T15:16:02Z","abstract_excerpt":"Motivation: Single Molecule Real-Time (SMRT) sequencing technology and Oxford Nanopore technologies (ONT) produce reads over 10kbp in length, which have enabled high-quality genome assembly at an affordable cost. However, at present, long reads have an error rate as high as 10-15%. Complex and computationally intensive pipelines are required to assemble such reads.\n  Results: We present a new mapper, minimap, and a de novo assembler, miniasm, for efficiently mapping and assembling SMRT and ONT reads without an error correction stage. They can often assemble a sequencing run of bacterial data i"},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"1512.01801","kind":"arxiv","version":2},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"},"aliases":[{"alias_kind":"arxiv","alias_value":"1512.01801","created_at":"2026-05-18T00:38:40.097845+00:00"},{"alias_kind":"arxiv_version","alias_value":"1512.01801v2","created_at":"2026-05-18T00:38:40.097845+00:00"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.1512.01801","created_at":"2026-05-18T00:38:40.097845+00:00"},{"alias_kind":"pith_short_12","alias_value":"TP7MYUJQHELV","created_at":"2026-05-18T12:29:42.218222+00:00"},{"alias_kind":"pith_short_16","alias_value":"TP7MYUJQHELVSX3U","created_at":"2026-05-18T12:29:42.218222+00:00"},{"alias_kind":"pith_short_8","alias_value":"TP7MYUJQ","created_at":"2026-05-18T12:29:42.218222+00:00"}],"events":[],"event_summary":{},"paper_claims":[],"inbound_citations":{"count":0,"internal_anchor_count":0,"sample":[]},"formal_canon":{"evidence_count":0,"sample":[],"anchors":[]},"links":{"html":"https://pith.science/pith/TP7MYUJQHELVSX3UREWW5JTMRO","json":"https://pith.science/pith/TP7MYUJQHELVSX3UREWW5JTMRO.json","graph_json":"https://pith.science/api/pith-number/TP7MYUJQHELVSX3UREWW5JTMRO/graph.json","events_json":"https://pith.science/api/pith-number/TP7MYUJQHELVSX3UREWW5JTMRO/events.json","paper":"https://pith.science/paper/TP7MYUJQ"},"agent_actions":{"view_html":"https://pith.science/pith/TP7MYUJQHELVSX3UREWW5JTMRO","download_json":"https://pith.science/pith/TP7MYUJQHELVSX3UREWW5JTMRO.json","view_paper":"https://pith.science/paper/TP7MYUJQ","resolve_alias":"https://pith.science/api/pith-number/resolve?arxiv=1512.01801&json=true","fetch_graph":"https://pith.science/api/pith-number/TP7MYUJQHELVSX3UREWW5JTMRO/graph.json","fetch_events":"https://pith.science/api/pith-number/TP7MYUJQHELVSX3UREWW5JTMRO/events.json","actions":{"anchor_timestamp":"https://pith.science/pith/TP7MYUJQHELVSX3UREWW5JTMRO/action/timestamp_anchor","attest_storage":"https://pith.science/pith/TP7MYUJQHELVSX3UREWW5JTMRO/action/storage_attestation","attest_author":"https://pith.science/pith/TP7MYUJQHELVSX3UREWW5JTMRO/action/author_attestation","sign_citation":"https://pith.science/pith/TP7MYUJQHELVSX3UREWW5JTMRO/action/citation_signature","submit_replication":"https://pith.science/pith/TP7MYUJQHELVSX3UREWW5JTMRO/action/replication_record"}},"created_at":"2026-05-18T00:38:40.097845+00:00","updated_at":"2026-05-18T00:38:40.097845+00:00"}