{"record_type":"pith_number_record","schema_url":"https://pith.science/schemas/pith-number/v1.json","pith_number":"pith:2015:TVFUT6V4MJTUPIPQNQSYG3OLAS","short_pith_number":"pith:TVFUT6V4","schema_version":"1.0","canonical_sha256":"9d4b49fabc626747a1f06c25836dcb0487f90cc0f91339d4c3247107cceb92d4","source":{"kind":"arxiv","id":"1504.00556","version":1},"attestation_state":"computed","paper":{"title":"RNF: a general framework to evaluate NGS read mappers","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","headline":"","cross_cats":[],"primary_cat":"q-bio.GN","authors_text":"Gregory Kucherov, Karel B\\v{r}inda, Valentina Boeva","submitted_at":"2015-04-02T13:41:46Z","abstract_excerpt":"Aligning reads to a reference sequence is a fundamental step in numerous bioinformatics pipelines. As a consequence, the sensitivity and precision of the mapping tool, applied with certain parameters to certain data, can critically affect the accuracy of produced results (e.g., in variant calling applications). Therefore, there has been an increasing demand of methods for comparing mappers and for measuring effects of their parameters.\n  Read simulators combined with alignment evaluation tools provide the most straightforward way to evaluate and compare mappers. Simulation of reads is accompan"},"verification_status":{"content_addressed":true,"pith_receipt":true,"author_attested":false,"weak_author_claims":0,"strong_author_claims":0,"externally_anchored":false,"storage_verified":false,"citation_signatures":0,"replication_records":0,"graph_snapshot":true,"references_resolved":false,"formal_links_present":false},"canonical_record":{"source":{"id":"1504.00556","kind":"arxiv","version":1},"metadata":{"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.GN","submitted_at":"2015-04-02T13:41:46Z","cross_cats_sorted":[],"title_canon_sha256":"d821aaebb1d6c759cba66bbf7bf89f626f5fb4b9566e2befc8fb0512073be3b4","abstract_canon_sha256":"03010d3df2bb2dc11f3b28c1a136f623d0574f771e8500fd6618fe0477db4e61"},"schema_version":"1.0"},"receipt":{"kind":"pith_receipt","key_id":"pith-v1-2026-05","algorithm":"ed25519","signed_at":"2026-05-18T01:19:00.505358Z","signature_b64":"vUKC5WvtCTB0BOJtPY+NALFtempELkfqxyglaAuWm85yjFv1yClIB8m9oCnWFtVRALVLh1cQ6d9iKCrM1Ub/Dw==","signed_message":"canonical_sha256_bytes","builder_version":"pith-number-builder-2026-05-17-v1","receipt_version":"0.3","canonical_sha256":"9d4b49fabc626747a1f06c25836dcb0487f90cc0f91339d4c3247107cceb92d4","last_reissued_at":"2026-05-18T01:19:00.504895Z","signature_status":"signed_v1","first_computed_at":"2026-05-18T01:19:00.504895Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"graph_snapshot":{"paper":{"title":"RNF: a general framework to evaluate NGS read mappers","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","headline":"","cross_cats":[],"primary_cat":"q-bio.GN","authors_text":"Gregory Kucherov, Karel B\\v{r}inda, Valentina Boeva","submitted_at":"2015-04-02T13:41:46Z","abstract_excerpt":"Aligning reads to a reference sequence is a fundamental step in numerous bioinformatics pipelines. As a consequence, the sensitivity and precision of the mapping tool, applied with certain parameters to certain data, can critically affect the accuracy of produced results (e.g., in variant calling applications). Therefore, there has been an increasing demand of methods for comparing mappers and for measuring effects of their parameters.\n  Read simulators combined with alignment evaluation tools provide the most straightforward way to evaluate and compare mappers. Simulation of reads is accompan"},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"1504.00556","kind":"arxiv","version":1},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"},"aliases":[{"alias_kind":"arxiv","alias_value":"1504.00556","created_at":"2026-05-18T01:19:00.504983+00:00"},{"alias_kind":"arxiv_version","alias_value":"1504.00556v1","created_at":"2026-05-18T01:19:00.504983+00:00"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.1504.00556","created_at":"2026-05-18T01:19:00.504983+00:00"},{"alias_kind":"pith_short_12","alias_value":"TVFUT6V4MJTU","created_at":"2026-05-18T12:29:42.218222+00:00"},{"alias_kind":"pith_short_16","alias_value":"TVFUT6V4MJTUPIPQ","created_at":"2026-05-18T12:29:42.218222+00:00"},{"alias_kind":"pith_short_8","alias_value":"TVFUT6V4","created_at":"2026-05-18T12:29:42.218222+00:00"}],"events":[],"event_summary":{},"paper_claims":[],"inbound_citations":{"count":0,"internal_anchor_count":0,"sample":[]},"formal_canon":{"evidence_count":0,"sample":[],"anchors":[]},"links":{"html":"https://pith.science/pith/TVFUT6V4MJTUPIPQNQSYG3OLAS","json":"https://pith.science/pith/TVFUT6V4MJTUPIPQNQSYG3OLAS.json","graph_json":"https://pith.science/api/pith-number/TVFUT6V4MJTUPIPQNQSYG3OLAS/graph.json","events_json":"https://pith.science/api/pith-number/TVFUT6V4MJTUPIPQNQSYG3OLAS/events.json","paper":"https://pith.science/paper/TVFUT6V4"},"agent_actions":{"view_html":"https://pith.science/pith/TVFUT6V4MJTUPIPQNQSYG3OLAS","download_json":"https://pith.science/pith/TVFUT6V4MJTUPIPQNQSYG3OLAS.json","view_paper":"https://pith.science/paper/TVFUT6V4","resolve_alias":"https://pith.science/api/pith-number/resolve?arxiv=1504.00556&json=true","fetch_graph":"https://pith.science/api/pith-number/TVFUT6V4MJTUPIPQNQSYG3OLAS/graph.json","fetch_events":"https://pith.science/api/pith-number/TVFUT6V4MJTUPIPQNQSYG3OLAS/events.json","actions":{"anchor_timestamp":"https://pith.science/pith/TVFUT6V4MJTUPIPQNQSYG3OLAS/action/timestamp_anchor","attest_storage":"https://pith.science/pith/TVFUT6V4MJTUPIPQNQSYG3OLAS/action/storage_attestation","attest_author":"https://pith.science/pith/TVFUT6V4MJTUPIPQNQSYG3OLAS/action/author_attestation","sign_citation":"https://pith.science/pith/TVFUT6V4MJTUPIPQNQSYG3OLAS/action/citation_signature","submit_replication":"https://pith.science/pith/TVFUT6V4MJTUPIPQNQSYG3OLAS/action/replication_record"}},"created_at":"2026-05-18T01:19:00.504983+00:00","updated_at":"2026-05-18T01:19:00.504983+00:00"}