{"bundle_type":"pith_open_graph_bundle","bundle_version":"1.0","pith_number":"pith:2014:V5AOUO63S36HUAQSM2E3RR4U7G","short_pith_number":"pith:V5AOUO63","canonical_record":{"source":{"id":"1404.3456","kind":"arxiv","version":1},"metadata":{"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"cs.DC","submitted_at":"2014-04-14T02:57:44Z","cross_cats_sorted":["cs.CE"],"title_canon_sha256":"27724c69353aa5acc1aaf64df43b33042cd5fb6400646454bcacec5dfab03b44","abstract_canon_sha256":"ea05e318d415b8f340c77571f03e3816c7180c5aee702077b207b536a14e8e55"},"schema_version":"1.0"},"canonical_sha256":"af40ea3bdb96fc7a02126689b8c794f9988f6c3643fc452b2c5828f6d3b1bb7a","source":{"kind":"arxiv","id":"1404.3456","version":1},"source_aliases":[{"alias_kind":"arxiv","alias_value":"1404.3456","created_at":"2026-05-18T02:54:15Z"},{"alias_kind":"arxiv_version","alias_value":"1404.3456v1","created_at":"2026-05-18T02:54:15Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.1404.3456","created_at":"2026-05-18T02:54:15Z"},{"alias_kind":"pith_short_12","alias_value":"V5AOUO63S36H","created_at":"2026-05-18T12:28:52Z"},{"alias_kind":"pith_short_16","alias_value":"V5AOUO63S36HUAQS","created_at":"2026-05-18T12:28:52Z"},{"alias_kind":"pith_short_8","alias_value":"V5AOUO63","created_at":"2026-05-18T12:28:52Z"}],"events":[{"event_type":"record_created","subject_pith_number":"pith:2014:V5AOUO63S36HUAQSM2E3RR4U7G","target":"record","payload":{"canonical_record":{"source":{"id":"1404.3456","kind":"arxiv","version":1},"metadata":{"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"cs.DC","submitted_at":"2014-04-14T02:57:44Z","cross_cats_sorted":["cs.CE"],"title_canon_sha256":"27724c69353aa5acc1aaf64df43b33042cd5fb6400646454bcacec5dfab03b44","abstract_canon_sha256":"ea05e318d415b8f340c77571f03e3816c7180c5aee702077b207b536a14e8e55"},"schema_version":"1.0"},"canonical_sha256":"af40ea3bdb96fc7a02126689b8c794f9988f6c3643fc452b2c5828f6d3b1bb7a","receipt":{"kind":"pith_receipt","key_id":"pith-v1-2026-05","algorithm":"ed25519","signed_at":"2026-05-18T02:54:15.148056Z","signature_b64":"g4QVkWs4mRi4BCRhZDQNKcUAPhws7lacmSYLpzMJhMvw5mAyAvWx4fouS0EuMfw0SStiSCVpcZ60c7NbG7x1Cw==","signed_message":"canonical_sha256_bytes","builder_version":"pith-number-builder-2026-05-17-v1","receipt_version":"0.3","canonical_sha256":"af40ea3bdb96fc7a02126689b8c794f9988f6c3643fc452b2c5828f6d3b1bb7a","last_reissued_at":"2026-05-18T02:54:15.147594Z","signature_status":"signed_v1","first_computed_at":"2026-05-18T02:54:15.147594Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"source_kind":"arxiv","source_id":"1404.3456","source_version":1,"attestation_state":"computed"},"signer":{"signer_id":"pith.science","signer_type":"pith_registry","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"created_at":"2026-05-18T02:54:15Z","supersedes":[],"prev_event":null,"signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"GsMjDHmFMiKcqvvEjAQtlWsNnwgxIvbUtYvKGAneq2Ip8ymgijz5C2U3Yydrvf3GEzhd33cNvwsDJZR52gHFAQ==","signed_message":"open_graph_event_sha256_bytes","signed_at":"2026-06-03T22:36:55.392114Z"},"content_sha256":"e8c06ef662aeb5b3a3c1a212e9918fe63d7fd7794ab537cd6c1d0269f495a456","schema_version":"1.0","event_id":"sha256:e8c06ef662aeb5b3a3c1a212e9918fe63d7fd7794ab537cd6c1d0269f495a456"},{"event_type":"graph_snapshot","subject_pith_number":"pith:2014:V5AOUO63S36HUAQSM2E3RR4U7G","target":"graph","payload":{"graph_snapshot":{"paper":{"title":"A Way For Accelerating The DNA Sequence Reconstruction Problem By CUDA","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","headline":"","cross_cats":["cs.CE"],"primary_cat":"cs.DC","authors_text":"XianHong Wang, XiongBin Cao, Yukun Zhong, Zhiwei He","submitted_at":"2014-04-14T02:57:44Z","abstract_excerpt":"Traditionally, we usually utilize the method of shotgun to cut a DNA sequence into pieces and we have to reconstruct the original DNA sequence from the pieces, those are widely used method for DNA assembly. Emerging DNA sequence technologies open up more opportunities for molecular biology. This paper introduce a new method to improve the efficiency of reconstructing DNA sequence using suffix array based on CUDA programming model. The experimental result show the construction of suffix array using GPU is an more efficient approach on Intel(R) Core(TM) i3-3110K quad-core and NVIDIA GeForce 610M"},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"1404.3456","kind":"arxiv","version":1},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"},"verdict_id":null},"signer":{"signer_id":"pith.science","signer_type":"pith_registry","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"created_at":"2026-05-18T02:54:15Z","supersedes":[],"prev_event":null,"signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"4NlAwfKwrgdXLefVbslB/aJ+8J5L9kdxJqwBmB4kOwvyc23ubsfDxWS2e51o0wAxsmD3/DdCG8kcJOxkObx3CA==","signed_message":"open_graph_event_sha256_bytes","signed_at":"2026-06-03T22:36:55.392484Z"},"content_sha256":"c10f8df9642b6eb4f90f0e93b0ac762fd4cf8963f3ca6171227f5959bdf7a55e","schema_version":"1.0","event_id":"sha256:c10f8df9642b6eb4f90f0e93b0ac762fd4cf8963f3ca6171227f5959bdf7a55e"}],"timestamp_proofs":[],"mirror_hints":[{"mirror_type":"https","name":"Pith Resolver","base_url":"https://pith.science","bundle_url":"https://pith.science/pith/V5AOUO63S36HUAQSM2E3RR4U7G/bundle.json","state_url":"https://pith.science/pith/V5AOUO63S36HUAQSM2E3RR4U7G/state.json","well_known_bundle_url":"https://pith.science/.well-known/pith/V5AOUO63S36HUAQSM2E3RR4U7G/bundle.json","status":"primary"}],"public_keys":[{"key_id":"pith-v1-2026-05","algorithm":"ed25519","format":"raw","public_key_b64":"stVStoiQhXFxp4s2pdzPNoqVNBMojDU/fJ2db5S3CbM=","public_key_hex":"b2d552b68890857171a78b36a5dccf368a953413288c353f7c9d9d6f94b709b3","fingerprint_sha256_b32_first128bits":"RVFV5Z2OI2J3ZUO7ERDEBCYNKS","fingerprint_sha256_hex":"8d4b5ee74e4693bcd1df2446408b0d54","rotates_at":null,"url":"https://pith.science/pith-signing-key.json","notes":"Pith uses this Ed25519 key to sign canonical record SHA-256 digests. Verify with: ed25519_verify(public_key, message=canonical_sha256_bytes, signature=base64decode(signature_b64))."}],"merge_version":"pith-open-graph-merge-v1","built_at":"2026-06-03T22:36:55Z","links":{"resolver":"https://pith.science/pith/V5AOUO63S36HUAQSM2E3RR4U7G","bundle":"https://pith.science/pith/V5AOUO63S36HUAQSM2E3RR4U7G/bundle.json","state":"https://pith.science/pith/V5AOUO63S36HUAQSM2E3RR4U7G/state.json","well_known_bundle":"https://pith.science/.well-known/pith/V5AOUO63S36HUAQSM2E3RR4U7G/bundle.json"},"state":{"state_type":"pith_open_graph_state","state_version":"1.0","pith_number":"pith:2014:V5AOUO63S36HUAQSM2E3RR4U7G","merge_version":"pith-open-graph-merge-v1","event_count":2,"valid_event_count":2,"invalid_event_count":0,"equivocation_count":0,"current":{"canonical_record":{"metadata":{"abstract_canon_sha256":"ea05e318d415b8f340c77571f03e3816c7180c5aee702077b207b536a14e8e55","cross_cats_sorted":["cs.CE"],"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"cs.DC","submitted_at":"2014-04-14T02:57:44Z","title_canon_sha256":"27724c69353aa5acc1aaf64df43b33042cd5fb6400646454bcacec5dfab03b44"},"schema_version":"1.0","source":{"id":"1404.3456","kind":"arxiv","version":1}},"source_aliases":[{"alias_kind":"arxiv","alias_value":"1404.3456","created_at":"2026-05-18T02:54:15Z"},{"alias_kind":"arxiv_version","alias_value":"1404.3456v1","created_at":"2026-05-18T02:54:15Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.1404.3456","created_at":"2026-05-18T02:54:15Z"},{"alias_kind":"pith_short_12","alias_value":"V5AOUO63S36H","created_at":"2026-05-18T12:28:52Z"},{"alias_kind":"pith_short_16","alias_value":"V5AOUO63S36HUAQS","created_at":"2026-05-18T12:28:52Z"},{"alias_kind":"pith_short_8","alias_value":"V5AOUO63","created_at":"2026-05-18T12:28:52Z"}],"graph_snapshots":[{"event_id":"sha256:c10f8df9642b6eb4f90f0e93b0ac762fd4cf8963f3ca6171227f5959bdf7a55e","target":"graph","created_at":"2026-05-18T02:54:15Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"graph_snapshot":{"author_claims":{"count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","strong_count":0},"builder_version":"pith-number-builder-2026-05-17-v1","claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"paper":{"abstract_excerpt":"Traditionally, we usually utilize the method of shotgun to cut a DNA sequence into pieces and we have to reconstruct the original DNA sequence from the pieces, those are widely used method for DNA assembly. Emerging DNA sequence technologies open up more opportunities for molecular biology. This paper introduce a new method to improve the efficiency of reconstructing DNA sequence using suffix array based on CUDA programming model. The experimental result show the construction of suffix array using GPU is an more efficient approach on Intel(R) Core(TM) i3-3110K quad-core and NVIDIA GeForce 610M","authors_text":"XianHong Wang, XiongBin Cao, Yukun Zhong, Zhiwei He","cross_cats":["cs.CE"],"headline":"","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"cs.DC","submitted_at":"2014-04-14T02:57:44Z","title":"A Way For Accelerating The DNA Sequence Reconstruction Problem By CUDA"},"references":{"count":0,"internal_anchors":0,"resolved_work":0,"sample":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"1404.3456","kind":"arxiv","version":1},"verdict":{"created_at":null,"id":null,"model_set":{},"one_line_summary":"","pipeline_version":null,"pith_extraction_headline":"","strongest_claim":"","weakest_assumption":""}},"verdict_id":null}}],"author_attestations":[],"timestamp_anchors":[],"storage_attestations":[],"citation_signatures":[],"replication_records":[],"corrections":[],"mirror_hints":[],"record_created":{"event_id":"sha256:e8c06ef662aeb5b3a3c1a212e9918fe63d7fd7794ab537cd6c1d0269f495a456","target":"record","created_at":"2026-05-18T02:54:15Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"attestation_state":"computed","canonical_record":{"metadata":{"abstract_canon_sha256":"ea05e318d415b8f340c77571f03e3816c7180c5aee702077b207b536a14e8e55","cross_cats_sorted":["cs.CE"],"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"cs.DC","submitted_at":"2014-04-14T02:57:44Z","title_canon_sha256":"27724c69353aa5acc1aaf64df43b33042cd5fb6400646454bcacec5dfab03b44"},"schema_version":"1.0","source":{"id":"1404.3456","kind":"arxiv","version":1}},"canonical_sha256":"af40ea3bdb96fc7a02126689b8c794f9988f6c3643fc452b2c5828f6d3b1bb7a","receipt":{"algorithm":"ed25519","builder_version":"pith-number-builder-2026-05-17-v1","canonical_sha256":"af40ea3bdb96fc7a02126689b8c794f9988f6c3643fc452b2c5828f6d3b1bb7a","first_computed_at":"2026-05-18T02:54:15.147594Z","key_id":"pith-v1-2026-05","kind":"pith_receipt","last_reissued_at":"2026-05-18T02:54:15.147594Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","receipt_version":"0.3","signature_b64":"g4QVkWs4mRi4BCRhZDQNKcUAPhws7lacmSYLpzMJhMvw5mAyAvWx4fouS0EuMfw0SStiSCVpcZ60c7NbG7x1Cw==","signature_status":"signed_v1","signed_at":"2026-05-18T02:54:15.148056Z","signed_message":"canonical_sha256_bytes"},"source_id":"1404.3456","source_kind":"arxiv","source_version":1}}},"equivocations":[],"invalid_events":[],"applied_event_ids":["sha256:e8c06ef662aeb5b3a3c1a212e9918fe63d7fd7794ab537cd6c1d0269f495a456","sha256:c10f8df9642b6eb4f90f0e93b0ac762fd4cf8963f3ca6171227f5959bdf7a55e"],"state_sha256":"f7c710483587b080bf194a28f5b8696394a2d0d9014e5e39d4af054664f58a89"},"bundle_signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"lXrUBCWqesrX+FtDZ558XfPBEJyJHM4DSyOImuZakfJYyfSmUzAMAGI5B3JS0nR/QP9ZqYBtH9yXPDg/2E/cAA==","signed_message":"bundle_sha256_bytes","signed_at":"2026-06-03T22:36:55.394483Z","bundle_sha256":"25509cab9ec83ff3c88c368ca4788dcb514334bf3b565f6eb56a2af7a69fade3"}}