{"record_type":"pith_number_record","schema_url":"https://pith.science/schemas/pith-number/v1.json","pith_number":"pith:2017:VPZ2XLQVM64PRQM6HG47NDQYAV","short_pith_number":"pith:VPZ2XLQV","schema_version":"1.0","canonical_sha256":"abf3abae1567b8f8c19e39b9f68e18056be3dc4bd25b3984a1d891959095587c","source":{"kind":"arxiv","id":"1707.01373","version":2},"attestation_state":"computed","paper":{"title":"Looping and Clustering model for the organization of protein-DNA complexes on the bacterial genome","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","headline":"","cross_cats":["cond-mat.soft","q-bio.SC"],"primary_cat":"physics.bio-ph","authors_text":"Andrea Parmeggiani, Chase P. Broedersz, Fr\\'ed\\'eric Geniet, Gabriel David, Jean-Charles Walter, J\\'er\\^ome Dorignac, John Palmeri, Ned S. Wingreen, Nils-Ole Walliser","submitted_at":"2017-06-30T15:28:28Z","abstract_excerpt":"The bacterial genome is organized in a structure called the nucleoid by a variety of associated proteins. These proteins can form complexes on DNA that play a central role in various biological processes, including chromosome segregation. A prominent example is the large ParB-DNA complex, which forms an essential component of the segregation machinery in many bacteria. ChIP-Seq experiments show that ParB proteins localize around centromere-like parS sites on the DNA to which ParB binds specifically, and spreads from there over large sections of the chromosome. Recent theoretical and experiment"},"verification_status":{"content_addressed":true,"pith_receipt":true,"author_attested":false,"weak_author_claims":0,"strong_author_claims":0,"externally_anchored":false,"storage_verified":false,"citation_signatures":0,"replication_records":0,"graph_snapshot":true,"references_resolved":false,"formal_links_present":false},"canonical_record":{"source":{"id":"1707.01373","kind":"arxiv","version":2},"metadata":{"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"physics.bio-ph","submitted_at":"2017-06-30T15:28:28Z","cross_cats_sorted":["cond-mat.soft","q-bio.SC"],"title_canon_sha256":"ef015fa6a7c9ab88556cd33ef8fccd3f1107f0148808711f6afa79994999dbd7","abstract_canon_sha256":"98429e7f28f3b060b8f609154f5f8418f4cb4ec0bf0aa40fd667e5b7fda74198"},"schema_version":"1.0"},"receipt":{"kind":"pith_receipt","key_id":"pith-v1-2026-05","algorithm":"ed25519","signed_at":"2026-05-18T00:18:19.928660Z","signature_b64":"tHrwpXcy9fCpzBmlUY90HDubUsjzVz2RH/zz9c274okXe+WMrDmxw6quLBunToPTT/oSYSlyT7GEMVAlYhz+Dw==","signed_message":"canonical_sha256_bytes","builder_version":"pith-number-builder-2026-05-17-v1","receipt_version":"0.3","canonical_sha256":"abf3abae1567b8f8c19e39b9f68e18056be3dc4bd25b3984a1d891959095587c","last_reissued_at":"2026-05-18T00:18:19.928173Z","signature_status":"signed_v1","first_computed_at":"2026-05-18T00:18:19.928173Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"graph_snapshot":{"paper":{"title":"Looping and Clustering model for the organization of protein-DNA complexes on the bacterial genome","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","headline":"","cross_cats":["cond-mat.soft","q-bio.SC"],"primary_cat":"physics.bio-ph","authors_text":"Andrea Parmeggiani, Chase P. Broedersz, Fr\\'ed\\'eric Geniet, Gabriel David, Jean-Charles Walter, J\\'er\\^ome Dorignac, John Palmeri, Ned S. Wingreen, Nils-Ole Walliser","submitted_at":"2017-06-30T15:28:28Z","abstract_excerpt":"The bacterial genome is organized in a structure called the nucleoid by a variety of associated proteins. These proteins can form complexes on DNA that play a central role in various biological processes, including chromosome segregation. A prominent example is the large ParB-DNA complex, which forms an essential component of the segregation machinery in many bacteria. ChIP-Seq experiments show that ParB proteins localize around centromere-like parS sites on the DNA to which ParB binds specifically, and spreads from there over large sections of the chromosome. Recent theoretical and experiment"},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"1707.01373","kind":"arxiv","version":2},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"},"aliases":[{"alias_kind":"arxiv","alias_value":"1707.01373","created_at":"2026-05-18T00:18:19.928246+00:00"},{"alias_kind":"arxiv_version","alias_value":"1707.01373v2","created_at":"2026-05-18T00:18:19.928246+00:00"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.1707.01373","created_at":"2026-05-18T00:18:19.928246+00:00"},{"alias_kind":"pith_short_12","alias_value":"VPZ2XLQVM64P","created_at":"2026-05-18T12:31:49.984773+00:00"},{"alias_kind":"pith_short_16","alias_value":"VPZ2XLQVM64PRQM6","created_at":"2026-05-18T12:31:49.984773+00:00"},{"alias_kind":"pith_short_8","alias_value":"VPZ2XLQV","created_at":"2026-05-18T12:31:49.984773+00:00"}],"events":[],"event_summary":{},"paper_claims":[],"inbound_citations":{"count":0,"internal_anchor_count":0,"sample":[]},"formal_canon":{"evidence_count":0,"sample":[],"anchors":[]},"links":{"html":"https://pith.science/pith/VPZ2XLQVM64PRQM6HG47NDQYAV","json":"https://pith.science/pith/VPZ2XLQVM64PRQM6HG47NDQYAV.json","graph_json":"https://pith.science/api/pith-number/VPZ2XLQVM64PRQM6HG47NDQYAV/graph.json","events_json":"https://pith.science/api/pith-number/VPZ2XLQVM64PRQM6HG47NDQYAV/events.json","paper":"https://pith.science/paper/VPZ2XLQV"},"agent_actions":{"view_html":"https://pith.science/pith/VPZ2XLQVM64PRQM6HG47NDQYAV","download_json":"https://pith.science/pith/VPZ2XLQVM64PRQM6HG47NDQYAV.json","view_paper":"https://pith.science/paper/VPZ2XLQV","resolve_alias":"https://pith.science/api/pith-number/resolve?arxiv=1707.01373&json=true","fetch_graph":"https://pith.science/api/pith-number/VPZ2XLQVM64PRQM6HG47NDQYAV/graph.json","fetch_events":"https://pith.science/api/pith-number/VPZ2XLQVM64PRQM6HG47NDQYAV/events.json","actions":{"anchor_timestamp":"https://pith.science/pith/VPZ2XLQVM64PRQM6HG47NDQYAV/action/timestamp_anchor","attest_storage":"https://pith.science/pith/VPZ2XLQVM64PRQM6HG47NDQYAV/action/storage_attestation","attest_author":"https://pith.science/pith/VPZ2XLQVM64PRQM6HG47NDQYAV/action/author_attestation","sign_citation":"https://pith.science/pith/VPZ2XLQVM64PRQM6HG47NDQYAV/action/citation_signature","submit_replication":"https://pith.science/pith/VPZ2XLQVM64PRQM6HG47NDQYAV/action/replication_record"}},"created_at":"2026-05-18T00:18:19.928246+00:00","updated_at":"2026-05-18T00:18:19.928246+00:00"}