{"bundle_type":"pith_open_graph_bundle","bundle_version":"1.0","pith_number":"pith:2023:ZOHMA4GJ7R5KZ3VMM5GTCHZF3M","short_pith_number":"pith:ZOHMA4GJ","canonical_record":{"source":{"id":"2311.18100","kind":"arxiv","version":3},"metadata":{"license":"http://creativecommons.org/licenses/by/4.0/","primary_cat":"cond-mat.soft","submitted_at":"2023-11-29T21:35:15Z","cross_cats_sorted":["physics.bio-ph","physics.data-an","q-bio.QM"],"title_canon_sha256":"a18b02ddf57998439d8444c2ea24eeda96963632b6ccf8dd4cde7af47beec0b4","abstract_canon_sha256":"3338cb0051970b1e1fa14250b536cb6b883b31cdc67638f464f7bfbe9e106961"},"schema_version":"1.0"},"canonical_sha256":"cb8ec070c9fc7aaceeac674d311f25db35c0dd0abe015f93114d0b7c4faffa47","source":{"kind":"arxiv","id":"2311.18100","version":3},"source_aliases":[{"alias_kind":"arxiv","alias_value":"2311.18100","created_at":"2026-07-05T11:52:12Z"},{"alias_kind":"arxiv_version","alias_value":"2311.18100v3","created_at":"2026-07-05T11:52:12Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.2311.18100","created_at":"2026-07-05T11:52:12Z"},{"alias_kind":"pith_short_12","alias_value":"ZOHMA4GJ7R5K","created_at":"2026-07-05T11:52:12Z"},{"alias_kind":"pith_short_16","alias_value":"ZOHMA4GJ7R5KZ3VM","created_at":"2026-07-05T11:52:12Z"},{"alias_kind":"pith_short_8","alias_value":"ZOHMA4GJ","created_at":"2026-07-05T11:52:12Z"}],"events":[{"event_type":"record_created","subject_pith_number":"pith:2023:ZOHMA4GJ7R5KZ3VMM5GTCHZF3M","target":"record","payload":{"canonical_record":{"source":{"id":"2311.18100","kind":"arxiv","version":3},"metadata":{"license":"http://creativecommons.org/licenses/by/4.0/","primary_cat":"cond-mat.soft","submitted_at":"2023-11-29T21:35:15Z","cross_cats_sorted":["physics.bio-ph","physics.data-an","q-bio.QM"],"title_canon_sha256":"a18b02ddf57998439d8444c2ea24eeda96963632b6ccf8dd4cde7af47beec0b4","abstract_canon_sha256":"3338cb0051970b1e1fa14250b536cb6b883b31cdc67638f464f7bfbe9e106961"},"schema_version":"1.0"},"canonical_sha256":"cb8ec070c9fc7aaceeac674d311f25db35c0dd0abe015f93114d0b7c4faffa47","receipt":{"kind":"pith_receipt","key_id":"pith-v1-2026-05","algorithm":"ed25519","signed_at":"2026-07-05T11:52:12.335303Z","signature_b64":"R3f99YYvp5tcQZoI4uQFcWwWkEjo5YVU459wRuFgDyL2lj0CxVap2xxMQGD63l95R/of0bRsKhgdlcA5ZxlpBA==","signed_message":"canonical_sha256_bytes","builder_version":"pith-number-builder-2026-05-17-v1","receipt_version":"0.3","canonical_sha256":"cb8ec070c9fc7aaceeac674d311f25db35c0dd0abe015f93114d0b7c4faffa47","last_reissued_at":"2026-07-05T11:52:12.334824Z","signature_status":"signed_v1","first_computed_at":"2026-07-05T11:52:12.334824Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"source_kind":"arxiv","source_id":"2311.18100","source_version":3,"attestation_state":"computed"},"signer":{"signer_id":"pith.science","signer_type":"pith_registry","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"created_at":"2026-07-05T11:52:12Z","supersedes":[],"prev_event":null,"signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"jZtZcYwQgybPTtBnZS2BckqouqgBz/T3dvf4VxWVlJ1DQ0iOqRHaHlMSp461gvKzSC7jTTr5Xw2bgr/dQtwECA==","signed_message":"open_graph_event_sha256_bytes","signed_at":"2026-08-13T14:55:35.663473Z"},"content_sha256":"719f4937fe2f76731683bb5f9f33da24a4e5df92df068e727d593ecd24b3e3dc","schema_version":"1.0","event_id":"sha256:719f4937fe2f76731683bb5f9f33da24a4e5df92df068e727d593ecd24b3e3dc"},{"event_type":"graph_snapshot","subject_pith_number":"pith:2023:ZOHMA4GJ7R5KZ3VMM5GTCHZF3M","target":"graph","payload":{"graph_snapshot":{"paper":{"title":"Quantitative evaluation of methods to analyze motion changes in single-particle experiments","license":"http://creativecommons.org/licenses/by/4.0/","headline":"","cross_cats":["physics.bio-ph","physics.data-an","q-bio.QM"],"primary_cat":"cond-mat.soft","authors_text":"Benjamin Midtvedt, Borja Requena, Carlo Manzo, Cl\\'ement Cabriel, Diego Krapf, Francisco J. Barrantes, Gabriel Fern\\'andez-Fern\\'andez, Giorgio Volpe, Giovanni Volpe, Gorka Mu\\~noz-Gil, Hao Sha, Harshith Bachimanchi, Hawoong Jeong, Ignacio Izeddin, Jacob K{\\ae}stel-Hansen, Jaeyong Bae, J. Alberto Conejero, Jes\\'us Pineda, Judith Min\\'e-Hattab, Junwoo Park, Lucas A. Saavedra, Maciej Lewenstein, Marc Escoto, Nataliya Sokolovska, Nikos S. Hatzakis, Ralf Metzler, Ran Ni, Rasched Haidari, Solomon Asghar, Steen W. B. Bender, Xiang Qu, Xiaochen Feng, Yongbing Zhang, Yuan Jiang, Yusef Ahsini, Zihan Huang","submitted_at":"2023-11-29T21:35:15Z","abstract_excerpt":"The analysis of live-cell single-molecule imaging experiments can reveal valuable information about the heterogeneity of transport processes and interactions between cell components. These characteristics are seen as motion changes in the particle trajectories. Despite the existence of multiple approaches to carry out this type of analysis, no objective assessment of these methods has been performed so far. Here, we report the results of a competition to characterize and rank the performance of these methods when analyzing the dynamic behavior of single molecules. To run this competition, we i"},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"2311.18100","kind":"arxiv","version":3},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"integrity":{"clean":true,"summary":{"advisory":0,"critical":0,"by_detector":{},"informational":0},"endpoint":"/pith/2311.18100/integrity.json","findings":[],"available":true,"detectors_run":[],"snapshot_sha256":"c28c3603d3b5d939e8dc4c7e95fa8dfce3d595e45f758748cecf8e644a296938"},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"},"verdict_id":null},"signer":{"signer_id":"pith.science","signer_type":"pith_registry","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"created_at":"2026-07-05T11:52:12Z","supersedes":[],"prev_event":null,"signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"SmPz9F5KseafgruzSernjadIKx6H68W/Z1wd8n1p2+7bzICFnmh87uooS0r7Qet1yi4Us+FkCQOHk/sB00MNBA==","signed_message":"open_graph_event_sha256_bytes","signed_at":"2026-08-13T14:55:35.664015Z"},"content_sha256":"59895b3e5982ea5b6e3722ced63daa4ddb9652b506f5f7e2664d4d3443ef320f","schema_version":"1.0","event_id":"sha256:59895b3e5982ea5b6e3722ced63daa4ddb9652b506f5f7e2664d4d3443ef320f"}],"timestamp_proofs":[],"mirror_hints":[{"mirror_type":"https","name":"Pith Resolver","base_url":"https://pith.science","bundle_url":"https://pith.science/pith/ZOHMA4GJ7R5KZ3VMM5GTCHZF3M/bundle.json","state_url":"https://pith.science/pith/ZOHMA4GJ7R5KZ3VMM5GTCHZF3M/state.json","well_known_bundle_url":"https://pith.science/.well-known/pith/ZOHMA4GJ7R5KZ3VMM5GTCHZF3M/bundle.json","status":"primary"}],"public_keys":[{"key_id":"pith-v1-2026-05","algorithm":"ed25519","format":"raw","public_key_b64":"stVStoiQhXFxp4s2pdzPNoqVNBMojDU/fJ2db5S3CbM=","public_key_hex":"b2d552b68890857171a78b36a5dccf368a953413288c353f7c9d9d6f94b709b3","fingerprint_sha256_b32_first128bits":"RVFV5Z2OI2J3ZUO7ERDEBCYNKS","fingerprint_sha256_hex":"8d4b5ee74e4693bcd1df2446408b0d54","rotates_at":null,"url":"https://pith.science/pith-signing-key.json","notes":"Pith uses this Ed25519 key to sign canonical record SHA-256 digests. Verify with: ed25519_verify(public_key, message=canonical_sha256_bytes, signature=base64decode(signature_b64))."}],"merge_version":"pith-open-graph-merge-v1","built_at":"2026-08-13T14:55:35Z","links":{"resolver":"https://pith.science/pith/ZOHMA4GJ7R5KZ3VMM5GTCHZF3M","bundle":"https://pith.science/pith/ZOHMA4GJ7R5KZ3VMM5GTCHZF3M/bundle.json","state":"https://pith.science/pith/ZOHMA4GJ7R5KZ3VMM5GTCHZF3M/state.json","well_known_bundle":"https://pith.science/.well-known/pith/ZOHMA4GJ7R5KZ3VMM5GTCHZF3M/bundle.json"},"state":{"state_type":"pith_open_graph_state","state_version":"1.0","pith_number":"pith:2023:ZOHMA4GJ7R5KZ3VMM5GTCHZF3M","merge_version":"pith-open-graph-merge-v1","event_count":2,"valid_event_count":2,"invalid_event_count":0,"equivocation_count":0,"current":{"canonical_record":{"metadata":{"abstract_canon_sha256":"3338cb0051970b1e1fa14250b536cb6b883b31cdc67638f464f7bfbe9e106961","cross_cats_sorted":["physics.bio-ph","physics.data-an","q-bio.QM"],"license":"http://creativecommons.org/licenses/by/4.0/","primary_cat":"cond-mat.soft","submitted_at":"2023-11-29T21:35:15Z","title_canon_sha256":"a18b02ddf57998439d8444c2ea24eeda96963632b6ccf8dd4cde7af47beec0b4"},"schema_version":"1.0","source":{"id":"2311.18100","kind":"arxiv","version":3}},"source_aliases":[{"alias_kind":"arxiv","alias_value":"2311.18100","created_at":"2026-07-05T11:52:12Z"},{"alias_kind":"arxiv_version","alias_value":"2311.18100v3","created_at":"2026-07-05T11:52:12Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.2311.18100","created_at":"2026-07-05T11:52:12Z"},{"alias_kind":"pith_short_12","alias_value":"ZOHMA4GJ7R5K","created_at":"2026-07-05T11:52:12Z"},{"alias_kind":"pith_short_16","alias_value":"ZOHMA4GJ7R5KZ3VM","created_at":"2026-07-05T11:52:12Z"},{"alias_kind":"pith_short_8","alias_value":"ZOHMA4GJ","created_at":"2026-07-05T11:52:12Z"}],"graph_snapshots":[{"event_id":"sha256:59895b3e5982ea5b6e3722ced63daa4ddb9652b506f5f7e2664d4d3443ef320f","target":"graph","created_at":"2026-07-05T11:52:12Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"graph_snapshot":{"author_claims":{"count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","strong_count":0},"builder_version":"pith-number-builder-2026-05-17-v1","claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"integrity":{"available":true,"clean":true,"detectors_run":[],"endpoint":"/pith/2311.18100/integrity.json","findings":[],"snapshot_sha256":"c28c3603d3b5d939e8dc4c7e95fa8dfce3d595e45f758748cecf8e644a296938","summary":{"advisory":0,"by_detector":{},"critical":0,"informational":0}},"paper":{"abstract_excerpt":"The analysis of live-cell single-molecule imaging experiments can reveal valuable information about the heterogeneity of transport processes and interactions between cell components. These characteristics are seen as motion changes in the particle trajectories. Despite the existence of multiple approaches to carry out this type of analysis, no objective assessment of these methods has been performed so far. Here, we report the results of a competition to characterize and rank the performance of these methods when analyzing the dynamic behavior of single molecules. To run this competition, we i","authors_text":"Benjamin Midtvedt, Borja Requena, Carlo Manzo, Cl\\'ement Cabriel, Diego Krapf, Francisco J. Barrantes, Gabriel Fern\\'andez-Fern\\'andez, Giorgio Volpe, Giovanni Volpe, Gorka Mu\\~noz-Gil, Hao Sha, Harshith Bachimanchi, Hawoong Jeong, Ignacio Izeddin, Jacob K{\\ae}stel-Hansen, Jaeyong Bae, J. Alberto Conejero, Jes\\'us Pineda, Judith Min\\'e-Hattab, Junwoo Park, Lucas A. Saavedra, Maciej Lewenstein, Marc Escoto, Nataliya Sokolovska, Nikos S. Hatzakis, Ralf Metzler, Ran Ni, Rasched Haidari, Solomon Asghar, Steen W. B. Bender, Xiang Qu, Xiaochen Feng, Yongbing Zhang, Yuan Jiang, Yusef Ahsini, Zihan Huang","cross_cats":["physics.bio-ph","physics.data-an","q-bio.QM"],"headline":"","license":"http://creativecommons.org/licenses/by/4.0/","primary_cat":"cond-mat.soft","submitted_at":"2023-11-29T21:35:15Z","title":"Quantitative evaluation of methods to analyze motion changes in single-particle experiments"},"references":{"count":0,"internal_anchors":0,"resolved_work":0,"sample":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"2311.18100","kind":"arxiv","version":3},"verdict":{"created_at":null,"id":null,"model_set":{},"one_line_summary":"","pipeline_version":null,"pith_extraction_headline":"","strongest_claim":"","weakest_assumption":""}},"verdict_id":null}}],"author_attestations":[],"timestamp_anchors":[],"storage_attestations":[],"citation_signatures":[],"replication_records":[],"corrections":[],"mirror_hints":[],"record_created":{"event_id":"sha256:719f4937fe2f76731683bb5f9f33da24a4e5df92df068e727d593ecd24b3e3dc","target":"record","created_at":"2026-07-05T11:52:12Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"attestation_state":"computed","canonical_record":{"metadata":{"abstract_canon_sha256":"3338cb0051970b1e1fa14250b536cb6b883b31cdc67638f464f7bfbe9e106961","cross_cats_sorted":["physics.bio-ph","physics.data-an","q-bio.QM"],"license":"http://creativecommons.org/licenses/by/4.0/","primary_cat":"cond-mat.soft","submitted_at":"2023-11-29T21:35:15Z","title_canon_sha256":"a18b02ddf57998439d8444c2ea24eeda96963632b6ccf8dd4cde7af47beec0b4"},"schema_version":"1.0","source":{"id":"2311.18100","kind":"arxiv","version":3}},"canonical_sha256":"cb8ec070c9fc7aaceeac674d311f25db35c0dd0abe015f93114d0b7c4faffa47","receipt":{"algorithm":"ed25519","builder_version":"pith-number-builder-2026-05-17-v1","canonical_sha256":"cb8ec070c9fc7aaceeac674d311f25db35c0dd0abe015f93114d0b7c4faffa47","first_computed_at":"2026-07-05T11:52:12.334824Z","key_id":"pith-v1-2026-05","kind":"pith_receipt","last_reissued_at":"2026-07-05T11:52:12.334824Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","receipt_version":"0.3","signature_b64":"R3f99YYvp5tcQZoI4uQFcWwWkEjo5YVU459wRuFgDyL2lj0CxVap2xxMQGD63l95R/of0bRsKhgdlcA5ZxlpBA==","signature_status":"signed_v1","signed_at":"2026-07-05T11:52:12.335303Z","signed_message":"canonical_sha256_bytes"},"source_id":"2311.18100","source_kind":"arxiv","source_version":3}}},"equivocations":[],"invalid_events":[],"applied_event_ids":["sha256:719f4937fe2f76731683bb5f9f33da24a4e5df92df068e727d593ecd24b3e3dc","sha256:59895b3e5982ea5b6e3722ced63daa4ddb9652b506f5f7e2664d4d3443ef320f"],"state_sha256":"02e3ade0dec43d39ea2d2419b725dd77dadcda2f9627c6dc2e686e2a4da8ead5"},"bundle_signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"h+mF6n639cmUkmXyMh3McBvpWhtktRLKR822uvoaHZgJplaNWaeIDFXb168ZYJLk/Nig0rNMZkFdUYuAzW0lAQ==","signed_message":"bundle_sha256_bytes","signed_at":"2026-08-13T14:55:35.688633Z","bundle_sha256":"332cad0e56f6f9e01c3e1150b599a8de9f634572f8dd0543aed94d75f139a00b"}}