{"bundle_type":"pith_open_graph_bundle","bundle_version":"1.0","pith_number":"pith:2022:ZWQBEXIPN2EPVZCOS6DPFYZ66A","short_pith_number":"pith:ZWQBEXIP","canonical_record":{"source":{"id":"2207.10080","kind":"arxiv","version":3},"metadata":{"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.QM","submitted_at":"2022-05-27T08:18:56Z","cross_cats_sorted":["cs.AI","cs.CL","cs.IR","cs.LG"],"title_canon_sha256":"fb8eb7dd73dcad15d7d9d41eac2b39e46bdd13430fd289c876d33a90ea89ebb6","abstract_canon_sha256":"b7368d45768e54de0997969d4d17c90b14cead04d96f9aab54a4aebf3d3768cf"},"schema_version":"1.0"},"canonical_sha256":"cda0125d0f6e88fae44e9786f2e33ef03119b0913b5272c44e256cc558d1c1f4","source":{"kind":"arxiv","id":"2207.10080","version":3},"source_aliases":[{"alias_kind":"arxiv","alias_value":"2207.10080","created_at":"2026-07-05T05:15:41Z"},{"alias_kind":"arxiv_version","alias_value":"2207.10080v3","created_at":"2026-07-05T05:15:41Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.2207.10080","created_at":"2026-07-05T05:15:41Z"},{"alias_kind":"pith_short_12","alias_value":"ZWQBEXIPN2EP","created_at":"2026-07-05T05:15:41Z"},{"alias_kind":"pith_short_16","alias_value":"ZWQBEXIPN2EPVZCO","created_at":"2026-07-05T05:15:41Z"},{"alias_kind":"pith_short_8","alias_value":"ZWQBEXIP","created_at":"2026-07-05T05:15:41Z"}],"events":[{"event_type":"record_created","subject_pith_number":"pith:2022:ZWQBEXIPN2EPVZCOS6DPFYZ66A","target":"record","payload":{"canonical_record":{"source":{"id":"2207.10080","kind":"arxiv","version":3},"metadata":{"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.QM","submitted_at":"2022-05-27T08:18:56Z","cross_cats_sorted":["cs.AI","cs.CL","cs.IR","cs.LG"],"title_canon_sha256":"fb8eb7dd73dcad15d7d9d41eac2b39e46bdd13430fd289c876d33a90ea89ebb6","abstract_canon_sha256":"b7368d45768e54de0997969d4d17c90b14cead04d96f9aab54a4aebf3d3768cf"},"schema_version":"1.0"},"canonical_sha256":"cda0125d0f6e88fae44e9786f2e33ef03119b0913b5272c44e256cc558d1c1f4","receipt":{"kind":"pith_receipt","key_id":"pith-v1-2026-05","algorithm":"ed25519","signed_at":"2026-07-05T05:15:41.565568Z","signature_b64":"xxUcruXDhKNEeCSYHocXlzQ+hwlsV4rqRg6ROeIcdli+jFcqygdWGDvffzIEJi0TVMziH9OnUBrlcStR7u32Dw==","signed_message":"canonical_sha256_bytes","builder_version":"pith-number-builder-2026-05-17-v1","receipt_version":"0.3","canonical_sha256":"cda0125d0f6e88fae44e9786f2e33ef03119b0913b5272c44e256cc558d1c1f4","last_reissued_at":"2026-07-05T05:15:41.565098Z","signature_status":"signed_v1","first_computed_at":"2026-07-05T05:15:41.565098Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"source_kind":"arxiv","source_id":"2207.10080","source_version":3,"attestation_state":"computed"},"signer":{"signer_id":"pith.science","signer_type":"pith_registry","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"created_at":"2026-07-05T05:15:41Z","supersedes":[],"prev_event":null,"signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"JfgLnPtk3XXKxw4yBVNvOWuiyuxxJDDv5AH4hs/GKRRU8LPXIBVR3pKEuysYThZkGvtTErqWFdIN2NfffMR9DQ==","signed_message":"open_graph_event_sha256_bytes","signed_at":"2026-07-05T15:38:06.407814Z"},"content_sha256":"3454aaab12e98a409514f13ff4ae875f2ec90e04a8cc3ca947d7377c2dd27dad","schema_version":"1.0","event_id":"sha256:3454aaab12e98a409514f13ff4ae875f2ec90e04a8cc3ca947d7377c2dd27dad"},{"event_type":"graph_snapshot","subject_pith_number":"pith:2022:ZWQBEXIPN2EPVZCOS6DPFYZ66A","target":"graph","payload":{"graph_snapshot":{"paper":{"title":"Multi-modal Protein Knowledge Graph Construction and Applications","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","headline":"","cross_cats":["cs.AI","cs.CL","cs.IR","cs.LG"],"primary_cat":"q-bio.QM","authors_text":"Huajun Chen, Ningyu Zhang, Siyuan Cheng, Xiaozhuan Liang, Zhen Bi","submitted_at":"2022-05-27T08:18:56Z","abstract_excerpt":"Existing data-centric methods for protein science generally cannot sufficiently capture and leverage biology knowledge, which may be crucial for many protein tasks. To facilitate research in this field, we create ProteinKG65, a knowledge graph for protein science. Using gene ontology and Uniprot knowledge base as a basis, we transform and integrate various kinds of knowledge with aligned descriptions and protein sequences, respectively, to GO terms and protein entities. ProteinKG65 is mainly dedicated to providing a specialized protein knowledge graph, bringing the knowledge of Gene Ontology t"},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"2207.10080","kind":"arxiv","version":3},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"integrity":{"clean":true,"summary":{"advisory":0,"critical":0,"by_detector":{},"informational":0},"endpoint":"/pith/2207.10080/integrity.json","findings":[],"available":true,"detectors_run":[],"snapshot_sha256":"c28c3603d3b5d939e8dc4c7e95fa8dfce3d595e45f758748cecf8e644a296938"},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"},"verdict_id":null},"signer":{"signer_id":"pith.science","signer_type":"pith_registry","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"created_at":"2026-07-05T05:15:41Z","supersedes":[],"prev_event":null,"signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"CbTe6rT9UW/ZzZYW0e57Fg3Rb+B4D7+O4cX+W3MGIhaO6RhgIRTTpXRGJoj82i1z9WJ6MlGpFTsPcV5jYk4lAg==","signed_message":"open_graph_event_sha256_bytes","signed_at":"2026-07-05T15:38:06.408473Z"},"content_sha256":"1e39848cd8c612fa1c9053d2a09368b7e09159a4432898142e9eb2932af6a6f9","schema_version":"1.0","event_id":"sha256:1e39848cd8c612fa1c9053d2a09368b7e09159a4432898142e9eb2932af6a6f9"}],"timestamp_proofs":[],"mirror_hints":[{"mirror_type":"https","name":"Pith Resolver","base_url":"https://pith.science","bundle_url":"https://pith.science/pith/ZWQBEXIPN2EPVZCOS6DPFYZ66A/bundle.json","state_url":"https://pith.science/pith/ZWQBEXIPN2EPVZCOS6DPFYZ66A/state.json","well_known_bundle_url":"https://pith.science/.well-known/pith/ZWQBEXIPN2EPVZCOS6DPFYZ66A/bundle.json","status":"primary"}],"public_keys":[{"key_id":"pith-v1-2026-05","algorithm":"ed25519","format":"raw","public_key_b64":"stVStoiQhXFxp4s2pdzPNoqVNBMojDU/fJ2db5S3CbM=","public_key_hex":"b2d552b68890857171a78b36a5dccf368a953413288c353f7c9d9d6f94b709b3","fingerprint_sha256_b32_first128bits":"RVFV5Z2OI2J3ZUO7ERDEBCYNKS","fingerprint_sha256_hex":"8d4b5ee74e4693bcd1df2446408b0d54","rotates_at":null,"url":"https://pith.science/pith-signing-key.json","notes":"Pith uses this Ed25519 key to sign canonical record SHA-256 digests. Verify with: ed25519_verify(public_key, message=canonical_sha256_bytes, signature=base64decode(signature_b64))."}],"merge_version":"pith-open-graph-merge-v1","built_at":"2026-07-05T15:38:06Z","links":{"resolver":"https://pith.science/pith/ZWQBEXIPN2EPVZCOS6DPFYZ66A","bundle":"https://pith.science/pith/ZWQBEXIPN2EPVZCOS6DPFYZ66A/bundle.json","state":"https://pith.science/pith/ZWQBEXIPN2EPVZCOS6DPFYZ66A/state.json","well_known_bundle":"https://pith.science/.well-known/pith/ZWQBEXIPN2EPVZCOS6DPFYZ66A/bundle.json"},"state":{"state_type":"pith_open_graph_state","state_version":"1.0","pith_number":"pith:2022:ZWQBEXIPN2EPVZCOS6DPFYZ66A","merge_version":"pith-open-graph-merge-v1","event_count":2,"valid_event_count":2,"invalid_event_count":0,"equivocation_count":0,"current":{"canonical_record":{"metadata":{"abstract_canon_sha256":"b7368d45768e54de0997969d4d17c90b14cead04d96f9aab54a4aebf3d3768cf","cross_cats_sorted":["cs.AI","cs.CL","cs.IR","cs.LG"],"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.QM","submitted_at":"2022-05-27T08:18:56Z","title_canon_sha256":"fb8eb7dd73dcad15d7d9d41eac2b39e46bdd13430fd289c876d33a90ea89ebb6"},"schema_version":"1.0","source":{"id":"2207.10080","kind":"arxiv","version":3}},"source_aliases":[{"alias_kind":"arxiv","alias_value":"2207.10080","created_at":"2026-07-05T05:15:41Z"},{"alias_kind":"arxiv_version","alias_value":"2207.10080v3","created_at":"2026-07-05T05:15:41Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.2207.10080","created_at":"2026-07-05T05:15:41Z"},{"alias_kind":"pith_short_12","alias_value":"ZWQBEXIPN2EP","created_at":"2026-07-05T05:15:41Z"},{"alias_kind":"pith_short_16","alias_value":"ZWQBEXIPN2EPVZCO","created_at":"2026-07-05T05:15:41Z"},{"alias_kind":"pith_short_8","alias_value":"ZWQBEXIP","created_at":"2026-07-05T05:15:41Z"}],"graph_snapshots":[{"event_id":"sha256:1e39848cd8c612fa1c9053d2a09368b7e09159a4432898142e9eb2932af6a6f9","target":"graph","created_at":"2026-07-05T05:15:41Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"graph_snapshot":{"author_claims":{"count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","strong_count":0},"builder_version":"pith-number-builder-2026-05-17-v1","claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"integrity":{"available":true,"clean":true,"detectors_run":[],"endpoint":"/pith/2207.10080/integrity.json","findings":[],"snapshot_sha256":"c28c3603d3b5d939e8dc4c7e95fa8dfce3d595e45f758748cecf8e644a296938","summary":{"advisory":0,"by_detector":{},"critical":0,"informational":0}},"paper":{"abstract_excerpt":"Existing data-centric methods for protein science generally cannot sufficiently capture and leverage biology knowledge, which may be crucial for many protein tasks. To facilitate research in this field, we create ProteinKG65, a knowledge graph for protein science. Using gene ontology and Uniprot knowledge base as a basis, we transform and integrate various kinds of knowledge with aligned descriptions and protein sequences, respectively, to GO terms and protein entities. ProteinKG65 is mainly dedicated to providing a specialized protein knowledge graph, bringing the knowledge of Gene Ontology t","authors_text":"Huajun Chen, Ningyu Zhang, Siyuan Cheng, Xiaozhuan Liang, Zhen Bi","cross_cats":["cs.AI","cs.CL","cs.IR","cs.LG"],"headline":"","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.QM","submitted_at":"2022-05-27T08:18:56Z","title":"Multi-modal Protein Knowledge Graph Construction and Applications"},"references":{"count":0,"internal_anchors":0,"resolved_work":0,"sample":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"2207.10080","kind":"arxiv","version":3},"verdict":{"created_at":null,"id":null,"model_set":{},"one_line_summary":"","pipeline_version":null,"pith_extraction_headline":"","strongest_claim":"","weakest_assumption":""}},"verdict_id":null}}],"author_attestations":[],"timestamp_anchors":[],"storage_attestations":[],"citation_signatures":[],"replication_records":[],"corrections":[],"mirror_hints":[],"record_created":{"event_id":"sha256:3454aaab12e98a409514f13ff4ae875f2ec90e04a8cc3ca947d7377c2dd27dad","target":"record","created_at":"2026-07-05T05:15:41Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"attestation_state":"computed","canonical_record":{"metadata":{"abstract_canon_sha256":"b7368d45768e54de0997969d4d17c90b14cead04d96f9aab54a4aebf3d3768cf","cross_cats_sorted":["cs.AI","cs.CL","cs.IR","cs.LG"],"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.QM","submitted_at":"2022-05-27T08:18:56Z","title_canon_sha256":"fb8eb7dd73dcad15d7d9d41eac2b39e46bdd13430fd289c876d33a90ea89ebb6"},"schema_version":"1.0","source":{"id":"2207.10080","kind":"arxiv","version":3}},"canonical_sha256":"cda0125d0f6e88fae44e9786f2e33ef03119b0913b5272c44e256cc558d1c1f4","receipt":{"algorithm":"ed25519","builder_version":"pith-number-builder-2026-05-17-v1","canonical_sha256":"cda0125d0f6e88fae44e9786f2e33ef03119b0913b5272c44e256cc558d1c1f4","first_computed_at":"2026-07-05T05:15:41.565098Z","key_id":"pith-v1-2026-05","kind":"pith_receipt","last_reissued_at":"2026-07-05T05:15:41.565098Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","receipt_version":"0.3","signature_b64":"xxUcruXDhKNEeCSYHocXlzQ+hwlsV4rqRg6ROeIcdli+jFcqygdWGDvffzIEJi0TVMziH9OnUBrlcStR7u32Dw==","signature_status":"signed_v1","signed_at":"2026-07-05T05:15:41.565568Z","signed_message":"canonical_sha256_bytes"},"source_id":"2207.10080","source_kind":"arxiv","source_version":3}}},"equivocations":[],"invalid_events":[],"applied_event_ids":["sha256:3454aaab12e98a409514f13ff4ae875f2ec90e04a8cc3ca947d7377c2dd27dad","sha256:1e39848cd8c612fa1c9053d2a09368b7e09159a4432898142e9eb2932af6a6f9"],"state_sha256":"67ab8c82ffe965399f9e4f2fc13613720739add2a38401b253d1d05255eb20b7"},"bundle_signature":{"signature_status":"signed_v1","algorithm":"ed25519","key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signature_b64":"ECtlvOBK6wBwWcsf2pHeqhbBH6slKDqjLktwDAoPOdI241tk/RhuO27qskaTLeBzjfnm8Pdt83wEohUQnyFrDA==","signed_message":"bundle_sha256_bytes","signed_at":"2026-07-05T15:38:06.413259Z","bundle_sha256":"db81c77236831c491edcf5963cb3c8c0493112f8f4d84b386f2df455f2b0d27b"}}