Bonnie Berger

Identifiers

• name variant Bonnie Berger 0.60 · backfill

Papers (30)

1. SwitchCraft: A Programmatic Framework for Designing State-Switching Proteins q-bio.BM · 2026 · author #8
2. E-valuator: Reliable Agent Verifiers with Sequential Hypothesis Testing cs.LG · 2025 · author #5
3. Learning residue level protein dynamics with multiscale Gaussians q-bio.BM · 2025 · author #3
4. Generative Modeling of Molecular Dynamics Trajectories q-bio.BM · 2024 · author #4
5. Dirichlet Flow Matching with Applications to DNA Sequence Design q-bio.BM · 2024 · author #5
6. AlphaFold Meets Flow Matching for Generating Protein Ensembles q-bio.BM · 2024 · author #2
7. Equivariant Scalar Fields for Molecular Docking with Fast Fourier Transforms q-bio.BM · 2023 · author #3
8. EigenFold: Generative Protein Structure Prediction with Diffusion Models q-bio.BM · 2023 · author #5
9. Scalable and Privacy-Preserving Federated Principal Component Analysis cs.CR · 2023 · author #8
10. Causally-guided Regularization of Graph Attention Improves Generalizability cs.LG · 2022 · author #3
11. Granger causal inference on DAGs identifies genomic loci regulating transcription cs.LG · 2022 · author #3
12. Enriching and Characterizing T-Cell Repertoires from 3' Barcoded Single-Cell Whole Transcriptome Amplification Products q-bio.GN · 2022 · author #7
13. Exploring generative atomic models in cryo-EM reconstruction q-bio.BM · 2021 · author #4
14. Explicitly disentangling image content from translation and rotation with spatial-VAE cs.CV · 2019 · author #5
15. Reconstructing continuous distributions of 3D protein structure from cryo-EM images q-bio.QM · 2019 · author #4
16. Learning protein sequence embeddings using information from structure cs.LG · 2019 · author #2
17. Fast Characterization of Segmental Duplications in Genome Assemblies cs.DS · 2018 · author #4
18. Large-Margin Classification in Hyperbolic Space cs.LG · 2018 · author #4
19. Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs q-bio.QM · 2018 · author #6
20. Enabling Privacy-Preserving GWAS in Heterogeneous Human Populations q-bio.QM · 2016 · author #3
21. Low-density locality-sensitive hashing boosts metagenomic binning q-bio.QM · 2016 · author #3
22. iTreePack: Protein Complex Side-Chain Packing by Dual Decomposition q-bio.BM · 2015 · author #3
23. Diffusion Component Analysis: Unraveling Functional Topology in Biological Networks q-bio.MN · 2015 · author #2
24. Entropy-scaling search of massive biological data cs.DS · 2015 · author #4
25. Ancient human genomes suggest three ancestral populations for present-day Europeans q-bio.PE · 2013 · author #11
26. Ancient west Eurasian ancestry in southern and eastern Africa q-bio.PE · 2013 · author #5
27. Efficient moment-based inference of admixture parameters and sources of gene flow q-bio.PE · 2012 · author #6
28. Reconstructing Roma history from genome-wide data q-bio.PE · 2012 · author #10
29. Inferring Admixture Histories of Human Populations Using Linkage Disequilibrium q-bio.PE · 2012 · author #7
30. The genetic prehistory of southern Africa q-bio.PE · 2012 · author #16

Mentions

• 2409.17808 #4 · arxiv_oai · confidence 0.70 Bonnie Berger
• 2402.04845 #2 · arxiv_oai · confidence 0.70 Bonnie Berger
• 2312.04323 #3 · arxiv_oai · confidence 0.70 Bonnie Berger
• 2402.05841 #5 · arxiv_oai · confidence 0.70 Bonnie Berger
• 2304.02198 #5 · arxiv_oai · confidence 0.70 Bonnie Berger
• 2304.00129 #8 · arxiv_oai · confidence 0.70 Bonnie Berger
• 2210.10946 #3 · arxiv_oai · confidence 0.70 Bonnie Berger
• 2210.10168 #3 · arxiv_oai · confidence 0.70 Bonnie Berger
• 2203.11266 #7 · arxiv_oai · confidence 0.70 Bonnie Berger
• 2107.01331 #4 · arxiv_oai · confidence 0.70 Bonnie Berger
• 1909.05215 #4 · arxiv_oai · confidence 0.70 Bonnie Berger
• 1902.08661 #2 · arxiv_oai · confidence 0.70 Bonnie Berger
• 1803.08207 #6 · arxiv_oai · confidence 0.70 Bonnie Berger
• 1909.11663 #5 · arxiv_oai · confidence 0.70 Bonnie Berger
• 1807.00205 #4 · arxiv_oai · confidence 0.70 Bonnie Berger
• 1806.00437 #4 · arxiv_oai · confidence 0.70 Bonnie Berger
• 1604.04484 #3 · arxiv_oai · confidence 0.70 Bonnie Berger
• 1604.02699 #3 · arxiv_oai · confidence 0.70 Bonnie Berger
• 1503.05638 #4 · arxiv_oai · confidence 0.70 Bonnie Berger
• 1312.6639 #11 · arxiv_oai · confidence 0.70 Bonnie Berger
• 1212.1696 #10 · arxiv_oai · confidence 0.70 Bonnie Berger
• 1504.05467 #3 · arxiv_oai · confidence 0.70 Bonnie Berger
• 1504.02719 #2 · arxiv_oai · confidence 0.70 Bonnie Berger
• 1307.8014 #5 · arxiv_oai · confidence 0.70 Bonnie Berger
• 1207.5552 #16 · arxiv_oai · confidence 0.70 Bonnie Berger
• 1212.2555 #6 · arxiv_oai · confidence 0.70 Bonnie Berger
• 1211.0251 #7 · arxiv_oai · confidence 0.70 Bonnie Berger
• 1504.05467 #3 · backfill · confidence 0.70 Bonnie Berger
• 1504.02719 #2 · backfill · confidence 0.70 Bonnie Berger
• 1503.05638 #4 · backfill · confidence 0.70 Bonnie Berger
• 2605.31236 #8 · arxiv_oai · confidence 0.70 Bonnie Berger
• 1312.6639 #11 · backfill · confidence 0.70 Bonnie Berger
• 2512.03109 #5 · arxiv_oai · confidence 0.70 Bonnie Berger
• 1307.8014 #5 · backfill · confidence 0.70 Bonnie Berger
• 1212.2555 #6 · backfill · confidence 0.70 Bonnie Berger
• 1212.1696 #10 · backfill · confidence 0.70 Bonnie Berger
• 1211.0251 #7 · backfill · confidence 0.70 Bonnie Berger
• 1207.5552 #16 · backfill · confidence 0.70 Bonnie Berger

Frequent Coauthors

• Bowen Jing 7 shared papers
• David Reich 6 shared papers
• Mark Lipson 6 shared papers
• Nick Patterson 6 shared papers
• Po-Ru Loh 5 shared papers
• Tommi Jaakkola 5 shared papers
• Jian Peng 4 shared papers
• Tristan Bepler 4 shared papers
• Ellen D. Zhong 3 shared papers
• Hyunghoon Cho 3 shared papers
• Alexander P. Wu 2 shared papers
• B\'ela Melegh 2 shared papers
• Brenna Henn 2 shared papers
• Brigitte Pakendorf 2 shared papers
• Gabriele Corso 2 shared papers
• Joanna Mountain 2 shared papers
• Joseph H. Davis 2 shared papers
• Joseph K. Pickrell 2 shared papers
• Mark Stoneking 2 shared papers
• Mihir Bafna 2 shared papers