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Giovanni Bussi

Identifiers

  • name variant Giovanni Bussi 0.60 · backfill

Papers (46)

  1. Beyond the Virial Expansion: Microscopic Origins of Partial Molar Volumes in LiCl Solutions physics.chem-ph · 2026 · author #7
  2. MERGE-RNA: a physics-based model to predict RNA secondary structure ensembles with chemical probing q-bio.BM · 2025 · author #5
  3. Machine Learning for RNA Secondary Structure Prediction: a review of current methods and challenges q-bio.BM · 2025 · author #2
  4. The mechanism of RNA base fraying: molecular dynamics simulations analyzed with core-set Markov state models physics.comp-ph · 2018 · author #5
  5. Using the Maximum Entropy Principle to Combine Simulations and Solution Experiments physics.comp-ph · 2018 · author #3
  6. Exploring RNA structure and dynamics through enhanced sampling simulations q-bio.BM · 2017 · author #2
  7. Understanding In-line Probing Experiments by Modeling Cleavage of Non-reactive RNA Nucleotides q-bio.BM · 2017 · author #2
  8. Unravelling Mg$^{2+}$-RNA binding with atomistic molecular dynamics q-bio.BM · 2016 · author #2
  9. Predicting the kinetics of RNA oligonucleotides using Markov state models physics.comp-ph · 2016 · author #7
  10. Combining simulations and solution experiments as a paradigm for RNA force field refinement physics.comp-ph · 2016 · author #3
  11. Computer Folding of RNA Tetraloops: Identification of Key Force Field Deficiencies q-bio.BM · 2016 · author #4
  12. Free Energy Landscape of GAGA and UUCG RNA Tetraloops q-bio.BM · 2016 · author #4
  13. Empirical corrections to the Amber RNA force field with Target Metadynamics q-bio.BM · 2016 · author #3
  14. RNA Folding Pathways in Stop Motion q-bio.BM · 2016 · author #3
  15. Hairpins Participating in Folding of Human Telomeric Sequence Quadruplexes Studied by Standard and T-REMD Simulations q-bio.BM · 2015 · author #5
  16. ATP dependent NS3 helicase interaction with RNA: insights from molecular simulations q-bio.BM · 2015 · author #3
  17. Elastic network models for RNA: a comparative assessment with molecular dynamics and SHAPE experiments q-bio.BM · 2015 · author #4
  18. Kissing loop interaction in adenine riboswitch: insights from umbrella sampling simulations q-bio.BM · 2015 · author #3
  19. Towards de novo RNA 3D structure prediction q-bio.BM · 2015 · author #3
  20. Enhanced Conformational Sampling using Replica Exchange with Collective-Variable Tempering physics.comp-ph · 2015 · author #2
  21. Accurate multiple time step in biased molecular simulations physics.comp-ph · 2014 · author #4
  22. The Role of Nucleobase Interactions in RNA Structure and Dynamics q-bio.BM · 2014 · author #3
  23. Enhanced Sampling in Molecular Dynamics Using Metadynamics, Replica-Exchange, and Temperature-Acceleration cond-mat.stat-mech · 2014 · author #2
  24. PLUMED 2: New feathers for an old bird physics.comp-ph · 2013 · author #5
  25. Ligand-induced stabilization of the aptamer terminal helix in the add adenine riboswitch q-bio.BM · 2013 · author #3
  26. RNA/peptide binding driven by electrostatics -- Insight from bi-directional pulling simulations q-bio.BM · 2013 · author #4
  27. Hamiltonian replica-exchange in GROMACS: a flexible implementation physics.comp-ph · 2013 · author #1
  28. Role of the Subunits Interactions in the Conformational Transitions in Adult Human Hemoglobin: an Explicit Solvent Molecular Dynamics Study physics.chem-ph · 2012 · author #3
  29. Metadynamics with adaptive Gaussians cond-mat.stat-mech · 2012 · author #2
  30. Ab initio complex band structure of conjugated polymers: Effects of hydrid DFT and GW schemes cond-mat.mtrl-sci · 2012 · author #4
  31. Colored-noise thermostats \`a la carte physics.comp-ph · 2012 · author #2
  32. RNA unwinding from reweighted pulling simulations physics.bio-ph · 2012 · author #2
  33. Reactive Force Field for Proton Diffusion in BaZrO3 using an empirical valence bond approach cond-mat.mtrl-sci · 2011 · author #3
  34. Nuclear quantum effects in solids using a colored-noise thermostat cond-mat.stat-mech · 2009 · author #2
  35. Isothermal-isobaric molecular dynamics using stochastic velocity rescaling cond-mat.stat-mech · 2009 · author #1
  36. A simple asynchronous replica-exchange implementation physics.comp-ph · 2008 · author #1
  37. Langevin equation with colored noise for constant-temperature molecular dynamics simulations cond-mat.stat-mech · 2008 · author #2
  38. Optimal Langevin modelling of out-of-equilibrium molecular dynamics simulations cond-mat.stat-mech · 2008 · author #2
  39. Equilibrium free energies from non-equilibrium metadynamics cond-mat.stat-mech · 2008 · author #1
  40. Conjugate gradient heatbath for ill-conditioned actions physics.comp-ph · 2008 · author #2
  41. Stochastic thermostats: comparison of local and global schemes physics.comp-ph · 2008 · author #1
  42. Accurate sampling using Langevin dynamics physics.comp-ph · 2008 · author #1
  43. Canonical sampling through velocity-rescaling cond-mat.stat-mech · 2008 · author #1
  44. Well-Tempered Metadynamics: A Smoothly Converging and Tunable Free-Energy Method cond-mat.stat-mech · 2008 · author #2
  45. Excitons in carbon nanotubes: an ab initio symmetry-based approach cond-mat.mtrl-sci · 2004 · author #2
  46. Solid state effects on exciton states and optical properties of PPV cond-mat.mtrl-sci · 2002 · author #3

Mentions

  • 1310.0980 #5 · backfill · confidence 0.70 Giovanni Bussi
  • 1309.5717 #3 · backfill · confidence 0.70 Giovanni Bussi
  • 1307.5565 #4 · backfill · confidence 0.70 Giovanni Bussi
  • 1307.5144 #1 · backfill · confidence 0.70 Giovanni Bussi
  • 1207.6904 #3 · backfill · confidence 0.70 Giovanni Bussi
  • 1205.4300 #2 · backfill · confidence 0.70 Giovanni Bussi
  • 1205.3282 #4 · backfill · confidence 0.70 Giovanni Bussi
  • 1204.0822 #2 · backfill · confidence 0.70 Giovanni Bussi
  • 1203.5866 #2 · backfill · confidence 0.70 Giovanni Bussi
  • 1104.0773 #3 · backfill · confidence 0.70 Giovanni Bussi
  • 2512.20581 #5 · arxiv_oai · confidence 0.70 Giovanni Bussi
  • 2511.02622 #2 · arxiv_oai · confidence 0.70 Giovanni Bussi
  • 0903.4551 #2 · backfill · confidence 0.70 Giovanni Bussi
  • 0901.0779 #1 · backfill · confidence 0.70 Giovanni Bussi
  • 0812.1633 #1 · backfill · confidence 0.70 Giovanni Bussi
  • 0812.1168 #2 · backfill · confidence 0.70 Giovanni Bussi
  • 0805.3606 #2 · backfill · confidence 0.70 Giovanni Bussi
  • 0804.0175 #1 · backfill · confidence 0.70 Giovanni Bussi
  • 0803.4444 #2 · backfill · confidence 0.70 Giovanni Bussi
  • 0803.4397 #1 · backfill · confidence 0.70 Giovanni Bussi
  • 0803.4083 #1 · backfill · confidence 0.70 Giovanni Bussi
  • 0803.4060 #1 · backfill · confidence 0.70 Giovanni Bussi
  • 0803.3861 #2 · backfill · confidence 0.70 Giovanni Bussi

Frequent Coauthors