Debashish Chowdhury

Identifiers

• name variant Debashish Chowdhury 0.60 · backfill

Papers (81)

1. A Biologically Motivated Asymmetric Exclusion Process: interplay of congestion in RNA polymerase traffic and slippage of nascent transcript cond-mat.stat-mech · 2018 · author #6
2. A biologically inspired two-species exclusion model: effects of RNA polymerase motor traffic on simultaneous DNA replication q-bio.SC · 2017 · author #5
3. A Multispecies Exclusion Process with Fusion and Fission of Rods: a model inspired by Intraflagellar Transport cond-mat.stat-mech · 2017 · author #2
4. Michaelis-Menten at 100 and allosterism at 50: driving molecular motors in a hailstorm with noisy ATPase engines and allosteric transmission physics.bio-ph · 2017 · author #1
5. Quantitative Connection Between Ensemble Thermodynamics and Single-Molecule Kinetics: A Case Study Using Cryogenic Electron Microscopy and Single-Molecule Fluorescence Resonance Energy Transfer Investigations of the Ribosome physics.bio-ph · 2017 · author #6
6. First Passage Time in Computation by Tape-Copying Turing Machines: Slippage of Nascent Tape physics.bio-ph · 2017 · author #3
7. Interference of two co-directional exclusion processes in the presence of a static bottleneck: a biologically motivated model physics.bio-ph · 2017 · author #2
8. Molecular force spectroscopy of kinetochore-microtubule attachment {\it in silico}: Mechanical signatures of an unusual catch bond and collective effects physics.bio-ph · 2016 · author #3
9. Slip of grip of a molecular motor on a crowded track: Modeling shift of reading frame of ribosome on RNA template physics.bio-ph · 2016 · author #3
10. A generalized Michaelis-Menten equation in protein synthesis: effects of mis-charged cognate tRNA and mis-reading of codon physics.bio-ph · 2015 · author #2
11. A Multispecies Exclusion Model Inspired By Transcriptional Interference physics.bio-ph · 2015 · author #4
12. Mixed molecular motor traffic on nucleic acid tracks: models of transcriptional interference and regulation of gene expression physics.bio-ph · 2015 · author #2
13. Single-enzyme kinetics with branched pathways: exact theory and series expansion physics.chem-ph · 2014 · author #2
14. Collective cargo hauling by a bundle of parallel microtubules: bi-directional motion caused by load-dependent polymerization and depolymerization q-bio.SC · 2014 · author #2
15. TASEP on parallel tracks: effects of mobile bottlenecks in fixed segments cond-mat.stat-mech · 2014 · author #2
16. Centenary of "Researches on irritability of plants" by Jagadis Chandra Bose physics.hist-ph · 2013 · author #1
17. Distribution of lifetimes of kinetochore-microtubule attachments: interplay of energy landscape, molecular motors and microtubule (de-)polymerization physics.bio-ph · 2013 · author #3
18. A theoretical model for attachment lifetimes of kinetochore-microtubules: Mechano-kinetic "catch-bond" mechanism for error-correction physics.bio-ph · 2013 · author #2
19. First-passage problems in DNA replication: effects of template tension on stepping and exonuclease activities of a DNA polymerase motor q-bio.SC · 2013 · author #2
20. Template-directed biopolymerization: tape-copying Turing machines physics.bio-ph · 2012 · author #2
21. Stochastic mechano-chemical kinetics of molecular motors: a multidisciplinary enterprise from a physicist's perspective physics.bio-ph · 2012 · author #1
22. Machines of life: catalogue, stochastic process modeling, probabilistic reverse engineering and the PIs- from Aristotle to Alberts physics.bio-ph · 2012 · author #1
23. Error correction during DNA replication physics.bio-ph · 2011 · author #2
24. Footprint traversal by ATP-dependent chromatin remodeler motor physics.bio-ph · 2011 · author #3
25. Stochastic theory of protein synthesis and polysome: ribosome profile on a single mRNA transcript physics.bio-ph · 2011 · author #2
26. Distribution of dwell times of a ribosome: effects of infidelity, kinetic proofreading and ribosome crowding physics.bio-ph · 2010 · author #2
27. Quality control by a mobile molecular workshop: quality versus quantity physics.bio-ph · 2010 · author #2
28. Stochastic kinetics of a single headed motor protein: dwell time distribution of KIF1A physics.bio-ph · 2010 · author #2
29. RNA polymerase motors: dwell time distribution, velocity and dynamical phases cond-mat.stat-mech · 2009 · author #3
30. Trafficlike collective movement of ants on trails: absence of jammed phase physics.bio-ph · 2009 · author #3
31. Stochastic kinetics of ribosomes: single motor properties and collective behavior physics.bio-ph · 2009 · author #3
32. Characteristics of ant-inspired traffic flow: Applying the social insect metaphor to traffic models stat.AP · 2009 · author #3
33. RNA polymerase motor on DNA track: effects of interactions, external force and torque physics.bio-ph · 2008 · author #3
34. Resource Letter: Bio-molecular Nano-machines: where Physics, Chemistry, Biology and Technology meet physics.bio-ph · 2008 · author #1
35. Transcriptional bursts: a unified model of machines and mechanisms physics.bio-ph · 2008 · author #2
36. Fluctuations in protein synthesis from a single RNA template: stochastic kinetics of ribosomes physics.bio-ph · 2008 · author #2
37. Intra-cellular traffic: bio-molecular motors on filamentary tracks physics.bio-ph · 2008 · author #1
38. Molecular motors: design, mechanism and control physics.bio-ph · 2007 · author #1
39. Interacting RNA polymerase motors on DNA track: effects of traffic congestion and intrinsic noise on RNA synthesis physics.bio-ph · 2007 · author #2
40. A two-state model for helicase translocation and unwinding of nucleic acids physics.bio-ph · 2007 · author #2
41. RNA polymerase motors on DNA track: effects of traffic congestion on RNA synthesis physics.bio-ph · 2007 · author #2
42. Modelling of self-driven particles: foraging ants and pedestrians cond-mat.stat-mech · 2007 · author #5
43. Traffic phenomena in biology: from molecular motors to organisms physics.bio-ph · 2007 · author #1
44. Modeling protein synthesis from a physicist's perspective: a toy model physics.bio-ph · 2007 · author #2
45. Intra-cellular transport by single-headed kinesin KIF1A: effects of single-motor mechano-chemistry and steric interactions physics.bio-ph · 2006 · author #5
46. Traffic of interacting ribosomes on mRNA during protein synthesis: effects of chemo-mechanics of individual ribosomes physics.bio-ph · 2006 · author #2
47. From aggressive driving to molecular motor traffic cond-mat.stat-mech · 2006 · author #3
48. Competition of coarsening and shredding of clusters in a driven diffusive lattice gas physics.bio-ph · 2006 · author #2
49. Collective effects in intra-cellular molecular motor transport: coordination, cooperation and competetion physics.bio-ph · 2006 · author #1
50. Traffic of interacting ribosomes: effects of single-machine mechano-chemistry on protein synthesis physics.bio-ph · 2006 · author #2
51. Physics of Transport and Traffic Phenomena in Biology: from molecular motors and cells to organisms physics.bio-ph · 2005 · author #1
52. Intra-cellular transport of single-headed molecular motors KIF1A physics.bio-ph · 2005 · author #4
53. Alice in a micro-factory: modeling materials and mechanisms of natural nano-machines physics.bio-ph · 2005 · author #1
54. 100 years of Einstein's theory of Brownian motion: from pollen grains to protein trains cond-mat.stat-mech · 2005 · author #1
55. Evolutionary ecology in-silico: Does mathematical modelling help in understanding the "generic" trends? q-bio.PE · 2005 · author #1
56. Collective effects in traffic on bi-directional ant-trails cond-mat.stat-mech · 2004 · author #3
57. Evolving eco-system: a network of networks q-bio.PE · 2004 · author #1
58. Evolutionary ecology in-silico:evolving foodwebs, migrating population and speciation q-bio.PE · 2004 · author #3
59. Self-organized patterns and traffic flow in colonies of organisms: from bacteria and social insects to vertebrates q-bio.PE · 2004 · author #1
60. Computer simulations of history of life: speciation, emergence of complex species from simpler organisms, and extinctions q-bio.PE · 2003 · author #1
61. Anomalous fundamental diagrams in traffic on ant trails cond-mat.stat-mech · 2003 · author #2
62. Dynamic instability of microtubules: effect of catastrophe-suppressing drugs cond-mat.stat-mech · 2003 · author #4
63. Unified "micro"- and "macro-" evolution of eco-systems: Self-organization of a dynamic network cond-mat.stat-mech · 2003 · author #2
64. Traffic flow of interacting self-driven particles: rails and trails, vehicles and vesicles cond-mat.stat-mech · 2003 · author #1
65. Cluster formation and anomalous fundamental diagram in an ant trail model cond-mat.stat-mech · 2002 · author #2
66. Sole-Manrubia model of biological evolution: some new insights cond-mat.stat-mech · 2002 · author #1
67. Power of the power-laws: lessons from unification of small and large time scales for evolution cond-mat.stat-mech · 2002 · author #1
68. A cellular-automata model of flow in ant-trails: non-monotonic variation of speed with density cond-mat.stat-mech · 2002 · author #1
69. Flow properties of driven-diffusive lattice gases: theory and computer simulation cond-mat.stat-mech · 2001 · author #1
70. Statistical Physics of Vehicular Traffic and Some Related Systems cond-mat.stat-mech · 2000 · author #1
71. Steady-states and kinetics of ordering in bus-route models: connection with the Nagel-Schreckenberg model cond-mat.stat-mech · 2000 · author #1
72. Spatio-temporal organization of vehicles in a cellular automata model of traffic with 'slow-to-start' rule cond-mat.stat-mech · 1998 · author #1
73. Distributions of Time- and Distance-Headways in the Nagel-Schreckenberg Model of Vehicular Traffic: Effects of Hindrances cond-mat.stat-mech · 1998 · author #1
74. A generalized spin model of financial markets cond-mat.stat-mech · 1998 · author #1
75. Self-organization of traffic jams in cities: effects of stochastic dynamics and signal periods cond-mat.stat-mech · 1998 · author #1
76. Immune Network: An Example of Complex Adaptive Systems cond-mat.stat-mech · 1998 · author #1
77. Kinetics of Phase ordering in Microemulsions and Micellar Solutions cond-mat.soft · 1997 · author #1
78. A Microscopic Model of Gemini Surfactants: Self-assemblies in Water and at Air-Water Interface cond-mat.soft · 1997 · author #2
79. Distributions of Time Headways in Particle-hopping Models of Vehicular Traffic cond-mat.stat-mech · 1997 · author #3
80. Particle-hopping Models of Vehicular Traffic: Distributions of Distance Headways and Distance Between Jams cond-mat.stat-mech · 1997 · author #1
81. Micellar Aggregates of Gemini Surfactants: Monte Carlo Simulation of a Microscopic Model cond-mat.soft · 1997 · author #2

Mentions

• 1203.2673 #1 · backfill · confidence 0.70 Debashish Chowdhury
• 1112.3276 #2 · backfill · confidence 0.70 Debashish Chowdhury
• 1107.1442 #3 · backfill · confidence 0.70 Debashish Chowdhury
• 1106.0674 #2 · backfill · confidence 0.70 Debashish Chowdhury
• 1008.0298 #2 · backfill · confidence 0.70 Debashish Chowdhury
• 1006.0611 #2 · backfill · confidence 0.70 Debashish Chowdhury
• 1004.4327 #2 · backfill · confidence 0.70 Debashish Chowdhury
• 0904.2625 #3 · backfill · confidence 0.70 Debashish Chowdhury
• 0903.2717 #3 · backfill · confidence 0.70 Debashish Chowdhury
• 0903.2608 #3 · backfill · confidence 0.70 Debashish Chowdhury
• 0903.1434 #3 · backfill · confidence 0.70 Debashish Chowdhury
• 0812.4692 #3 · backfill · confidence 0.70 Debashish Chowdhury
• 0807.2731 #1 · backfill · confidence 0.70 Debashish Chowdhury
• 0804.1227 #2 · backfill · confidence 0.70 Debashish Chowdhury
• 0803.1558 #2 · backfill · confidence 0.70 Debashish Chowdhury
• 0801.2214 #1 · backfill · confidence 0.70 Debashish Chowdhury
• 0709.1800 #1 · backfill · confidence 0.70 Debashish Chowdhury
• 0708.1067 #2 · backfill · confidence 0.70 Debashish Chowdhury
• 0707.2766 #2 · backfill · confidence 0.70 Debashish Chowdhury
• 0706.2115 #2 · backfill · confidence 0.70 Debashish Chowdhury

Frequent Coauthors

• Andreas Schadschneider 18 shared papers
• Katsuhiro Nishinari 15 shared papers
• Ajeet K. Sharma 8 shared papers
• Ashok Garai 8 shared papers
• Dietrich Stauffer 7 shared papers
• Tripti Tripathi 6 shared papers
• Ambarish Kunwar 5 shared papers
• Soumendu Ghosh 5 shared papers
• Aakash Basu 4 shared papers
• Alexander John 4 shared papers
• Dipanwita Ghanti 4 shared papers
• Shubhadeep Patra 4 shared papers
• Bhavya Mishra 3 shared papers
• Prabal K. Maiti 3 shared papers
• Shishir Sinha 3 shared papers
• Abhay Pasupathy 2 shared papers
• Annwesha Dutta 2 shared papers
• Arnab Majumdar 2 shared papers
• Blerta Shtylla 2 shared papers
• Gunter M. Sch\"utz 2 shared papers