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Eugene I. Shakhnovich

Identifiers

  • name variant Eugene I. Shakhnovich 0.60 · backfill

Papers (59)

  1. Improved fragment-based movement with LRFragLib for all-atom Ab initio protein folding q-bio.QM · 2019 · author #3
  2. Mutation rate variability as a driving force in adaptive evolution q-bio.PE · 2018 · author #2
  3. Accurate protein-folding transition-path statistics from a simple free-energy landscape q-bio.BM · 2018 · author #2
  4. Growth tradeoffs produce complex microbial communities on a single limiting resource q-bio.PE · 2018 · author #2
  5. Absence of selection for quantum coherence in the Fenna-Matthews-Olson complex: a combined evolutionary and excitonic study physics.bio-ph · 2017 · author #7
  6. Tradeoffs between microbial growth phases lead to frequency-dependent and non-transitive selection q-bio.PE · 2016 · author #3
  7. Graph's Topology and Free Energy of a Spin Model on the Graph cond-mat.stat-mech · 2016 · author #3
  8. An internal disulfide locks a misfolded aggregation-prone intermediate in cataract-linked mutants of human {\gamma}D-crystallin q-bio.BM · 2016 · author #6
  9. Structure-based prediction of protein-folding transition paths q-bio.BM · 2016 · author #2
  10. The role of evolutionary selection in the dynamics of protein structure evolution q-bio.PE · 2016 · author #4
  11. Soluble oligomerization provides a beneficial fitness effect on destabilizing mutations q-bio.BM · 2012 · author #3
  12. Multi-scale sequence correlations increase proteome structural disorder and promiscuity q-bio.BM · 2010 · author #2
  13. Protein abundances and interactions coevolve to promote functional complexes while suppressing non-specific binding q-bio.BM · 2010 · author #3
  14. Sequence correlations shape protein promiscuity q-bio.BM · 2010 · author #3
  15. Optimality of mutation and selection in germinal centers q-bio.PE · 2010 · author #2
  16. Thymic selection of T-cell receptors as an extreme value problem physics.bio-ph · 2009 · author #4
  17. Thermal Adaptation in Viruses and Bacteria q-bio.BM · 2009 · author #2
  18. Lethal Mutagenesis in Viruses and Bacteria q-bio.BM · 2009 · author #2
  19. Slowly replicating lytic viruses: pseudolysogenic persistence and within-host competition q-bio.PE · 2008 · author #2
  20. Emergence of species in evolutionary simulated annealing q-bio.PE · 2008 · author #3
  21. Emergence of mutationally robust proteins in a microscopic model of evolution q-bio.BM · 2008 · author #2
  22. Diversity against adversity: How adaptive immunity evolves potent antibodies q-bio.CB · 2008 · author #3
  23. Emergence of clonal selection and affinity maturation in an ab initio microscopic model of immunity q-bio.BM · 2007 · author #3
  24. DNA unzipping phase diagram calculated via replica theory cond-mat.soft · 2007 · author #4
  25. Sensitivity dependent model of protein-protein interaction networks q-bio.MN · 2006 · author #2
  26. All-atom ab initio folding of a diverse set of proteins q-bio.BM · 2006 · author #4
  27. Thermodynamics of the Hairpin Ribozyme from All-Atom Simulations q-bio.BM · 2006 · author #2
  28. Protein and DNA sequence determinants of thermophilic adaptation q-bio.BM · 2006 · author #3
  29. Positive and negative design in stability and thermal adaptation of natural proteins q-bio.BM · 2006 · author #3
  30. Emergence of the protein universe in organismal evolution q-bio.PE · 2006 · author #3
  31. Information and Protein Interfaces q-bio.BM · 2006 · author #4
  32. A Structure-Centric View of Protein Evolution, Design and Adaptation q-bio.BM · 2006 · author #2
  33. High resolution protein folding with a transferable potential q-bio.BM · 2005 · author #3
  34. A simple physical model for scaling in protein-protein interaction networks q-bio.MN · 2005 · author #3
  35. Entropic stabilization of proteins and its proteomic consequences q-bio.BM · 2005 · author #4
  36. Geometric and physical considerations for realistic protein models q-bio.BM · 2005 · author #2
  37. Nucleation and the transition state of the SH3 domain q-bio.BM · 2005 · author #3
  38. Evolutionary dynamics of adult stem cells: Comparison of random and immortal strand segregation mechanisms q-bio.TO · 2004 · author #3
  39. Of sequence and structure: Strategies of protein thermostability in evolutionary perspective q-bio.BM · 2004 · author #2
  40. The Emergence of Scaling in Sequence-based Physical Models of Protein Evolution q-bio.PE · 2004 · author #2
  41. Semiconservative replication in the quasispecies model II: Generalization to arbitrary lesion repair probabilities q-bio.PE · 2004 · author #3
  42. Imperfect DNA Repair and the Error Catastrophe q-bio.BM · 2004 · author #3
  43. The Importance of DNA Repair in Tumor Suppression q-bio.GN · 2004 · author #2
  44. Solution of the Quasispecies Model for an Arbitrary Gene Network q-bio.GN · 2004 · author #2
  45. An Exact Model of Fluctuations in Gene Expression q-bio.MN · 2004 · author #3
  46. Host-Parasite Co-evolution and Optimal Mutation Rates for Semi-conservative Quasispecies q-bio.PE · 2004 · author #2
  47. A Selective Advantage for Conservative Viruses q-bio.PE · 2004 · author #2
  48. Semiconservative Replication in the Quasispecies Model cond-mat · 2003 · author #3
  49. The Error and Repair Catastrophes: A Two-Dimensional Phase Diagram in the Quasispecies Model cond-mat.stat-mech · 2003 · author #2
  50. Protein Evolution within a Structural Space cond-mat.soft · 2003 · author #3
  51. Equilibrium Distribution of Mutators in the Single Fitness Peak Model cond-mat.stat-mech · 2003 · author #3
  52. Structural Determinant of Protein Designability cond-mat.soft · 2002 · author #2
  53. Mechanical response of random heteropolymers cond-mat.stat-mech · 2001 · author #2
  54. Phase diagram for unzipping DNA with long-range interactions cond-mat.soft · 2001 · author #2
  55. Reversible stretching of homopolymers and random heteropolymers cond-mat.soft · 2001 · author #2
  56. Understanding hierarchical protein evolution from first principles cond-mat.stat-mech · 2001 · author #2
  57. Excluded Volume in Protein Sidechain Packing cond-mat.soft · 2001 · author #3
  58. Understanding conserved amino acids in proteins cond-mat.stat-mech · 2000 · author #3
  59. An Analytical Approach to the Protein Designability Problem cond-mat.soft · 1999 · author #2

Mentions

  • 1204.2198 #3 · backfill · confidence 0.70 Eugene I. Shakhnovich
  • 1011.0765 #2 · backfill · confidence 0.70 Eugene I. Shakhnovich
  • 1007.2668 #3 · backfill · confidence 0.70 Eugene I. Shakhnovich
  • 1004.5048 #3 · backfill · confidence 0.70 Eugene I. Shakhnovich
  • 1002.1512 #2 · backfill · confidence 0.70 Eugene I. Shakhnovich
  • 0907.2065 #4 · backfill · confidence 0.70 Eugene I. Shakhnovich
  • 0906.0390 #2 · backfill · confidence 0.70 Eugene I. Shakhnovich
  • 0903.1475 #2 · backfill · confidence 0.70 Eugene I. Shakhnovich
  • 0810.2760 #2 · backfill · confidence 0.70 Eugene I. Shakhnovich
  • 0810.1765 #3 · backfill · confidence 0.70 Eugene I. Shakhnovich
  • 0806.3772 #2 · backfill · confidence 0.70 Eugene I. Shakhnovich
  • 0805.3841 #3 · backfill · confidence 0.70 Eugene I. Shakhnovich
  • 0711.3456 #3 · backfill · confidence 0.70 Eugene I. Shakhnovich

Frequent Coauthors