A fusion model called scMPT, combining scGPT with an LLM text encoder, improves single-cell cell type classification on most tested datasets, and the paper shows the LLM relies on marker genes and simple expression patterns.
Do Language Models Know the Way to Rome?
1 Pith paper cite this work. Polarity classification is still indexing.
abstract
The global geometry of language models is important for a range of applications, but language model probes tend to evaluate rather local relations, for which ground truths are easily obtained. In this paper we exploit the fact that in geography, ground truths are available beyond local relations. In a series of experiments, we evaluate the extent to which language model representations of city and country names are isomorphic to real-world geography, e.g., if you tell a language model where Paris and Berlin are, does it know the way to Rome? We find that language models generally encode limited geographic information, but with larger models performing the best, suggesting that geographic knowledge can be induced from higher-order co-occurrence statistics.
citation-role summary
citation-polarity summary
fields
cs.LG 1years
2025 1verdicts
CONDITIONAL 1roles
background 1polarities
background 1representative citing papers
citing papers explorer
-
Towards Applying Large Language Models to Complement Single-Cell Foundation Models
A fusion model called scMPT, combining scGPT with an LLM text encoder, improves single-cell cell type classification on most tested datasets, and the paper shows the LLM relies on marker genes and simple expression patterns.