DNA pretraining suffers from inappropriate evaluation datasets, flawed neighbor-masking, and neglected vocabulary design; the authors supply guidelines and a reproducible testbed to fix them.
Model decides how to tokenize: Adaptive dna sequence tok- enization with mxdna.Advances in Neural Information Pro- cessing Systems, 37:66080–66107, 2024
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In Search of Lost DNA Sequence Pretraining
DNA pretraining suffers from inappropriate evaluation datasets, flawed neighbor-masking, and neglected vocabulary design; the authors supply guidelines and a reproducible testbed to fix them.