FILTR compiles bioinformatics DP recurrences with separable scheduling and pruning directives into C++ code achieving 0.95x–30x speedup over hand-optimized libraries.
Moure, Miquel Moreto, and Antonio Espinosa
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Compiling Bioinformatics Recurrences
FILTR compiles bioinformatics DP recurrences with separable scheduling and pruning directives into C++ code achieving 0.95x–30x speedup over hand-optimized libraries.