CellRefine adds a marker-gene-guided post-pretraining stage to single-cell models that refines the cell embedding manifold and improves downstream task performance by up to 15%.
Transformer for one stop interpretable cell type annotation.Nature Communications, 14(1):223
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Prototype Guided Post-pretraining for Single-Cell Representation Learning
CellRefine adds a marker-gene-guided post-pretraining stage to single-cell models that refines the cell embedding manifold and improves downstream task performance by up to 15%.