q2-classo and q2-gglasso are QIIME 2 plugins that implement sparse log-contrast regression/classification and graphical lasso-based network estimation for microbial compositional data.
Tree-aggregated predictive modeling of microbiome data.Scientific Reports, 11(1):14505, 2021
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Sparse regression, classification, and microbial network estimation in QIIME2 with q2-classo and q2-gglasso
q2-classo and q2-gglasso are QIIME 2 plugins that implement sparse log-contrast regression/classification and graphical lasso-based network estimation for microbial compositional data.