scGSL tunes cell-cell graphs with GNN graph structure learning and pairwise alignment transfer, improving cell type annotation over 10 baselines and yielding graphs proposed to reflect tumor microenvironment interactions.
Transcriptome analysis of individual stromal cell populations identifies stroma-tumor crosstalk in mouse lung cancer model,
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Graph Structure Learning for Tumor Microenvironment with Cell Type Annotation from non-spatial scRNA-seq data
scGSL tunes cell-cell graphs with GNN graph structure learning and pairwise alignment transfer, improving cell type annotation over 10 baselines and yielding graphs proposed to reflect tumor microenvironment interactions.