RefineNovo, a non-autoregressive peptide sequencing model with CTC-based curriculum masking and iterative refinement, reports state-of-the-art amino acid precision and peptide recall on the 9-species benchmarks.
Progressive Multi-Granularity Training for Non-Autoregressive Translation
1 Pith paper cite this work. Polarity classification is still indexing.
abstract
Non-autoregressive translation (NAT) significantly accelerates the inference process via predicting the entire target sequence. However, recent studies show that NAT is weak at learning high-mode of knowledge such as one-to-many translations. We argue that modes can be divided into various granularities which can be learned from easy to hard. In this study, we empirically show that NAT models are prone to learn fine-grained lower-mode knowledge, such as words and phrases, compared with sentences. Based on this observation, we propose progressive multi-granularity training for NAT. More specifically, to make the most of the training data, we break down the sentence-level examples into three types, i.e. words, phrases, sentences, and with the training goes, we progressively increase the granularities. Experiments on Romanian-English, English-German, Chinese-English, and Japanese-English demonstrate that our approach improves the phrase translation accuracy and model reordering ability, therefore resulting in better translation quality against strong NAT baselines. Also, we show that more deterministic fine-grained knowledge can further enhance performance.
fields
q-bio.BM 1years
2025 1verdicts
CONDITIONAL 1representative citing papers
citing papers explorer
-
Curriculum Learning for Biological Sequence Prediction: The Case of De Novo Peptide Sequencing
RefineNovo, a non-autoregressive peptide sequencing model with CTC-based curriculum masking and iterative refinement, reports state-of-the-art amino acid precision and peptide recall on the 9-species benchmarks.