A Kernighan-Lin plus information-entropy heuristic automatically partitions Boolean reaction networks for low-rank master equation integration, outperforming manual and cut-minimal partitions in tests on mTOR, pancreatic cancer, and apoptosis models.
A survey of gene regulatory networks modelling methods: from differential equations, to Boolean and qualitative bioinspired models
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Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks
A Kernighan-Lin plus information-entropy heuristic automatically partitions Boolean reaction networks for low-rank master equation integration, outperforming manual and cut-minimal partitions in tests on mTOR, pancreatic cancer, and apoptosis models.